miRNA display CGI


Results 121 - 140 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 22554 0.66 0.595704
Target:  5'- uGCCCGAGGCGaucGCGCGgGccuggucgagggugGCCUcgGUGCGg -3'
miRNA:   3'- -CGGGUUUUGU---CGCGCgU--------------UGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22692 0.7 0.386936
Target:  5'- uGUCgAcgGCGGCGCugGCGGCCUGgGCGa -3'
miRNA:   3'- -CGGgUuuUGUCGCG--CGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 22938 0.72 0.297254
Target:  5'- cGCCgGAuACA-CGCGCAGCugaCCGCGUGg -3'
miRNA:   3'- -CGGgUUuUGUcGCGCGUUG---GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 23044 0.69 0.440889
Target:  5'- uGCCCG--GCGGCGUGCcgaucacgcacuACgCCGUGCGc -3'
miRNA:   3'- -CGGGUuuUGUCGCGCGu-----------UG-GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 23379 0.7 0.369366
Target:  5'- cGCCgAGGAUgaAGCGCGCGGCggcuuucaGCGCGg -3'
miRNA:   3'- -CGGgUUUUG--UCGCGCGUUGgg------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 23409 0.7 0.386936
Target:  5'- uGCCCGAca-AGCGCGgcGCCUGCGUc -3'
miRNA:   3'- -CGGGUUuugUCGCGCguUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 23713 0.68 0.472423
Target:  5'- cGCCC-AGGCGGCGaaCGACUCgGCGCa -3'
miRNA:   3'- -CGGGuUUUGUCGCgcGUUGGG-CGCGc -5'
13001 5' -56.7 NC_003387.1 + 23839 0.67 0.555692
Target:  5'- cGCgCCGGGACucGGCGC-CGugCCGCucGCGg -3'
miRNA:   3'- -CG-GGUUUUG--UCGCGcGUugGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 23952 0.73 0.242752
Target:  5'- uCCCAugcuGCAGCacguGCGCAGCgCCGgGCGg -3'
miRNA:   3'- cGGGUuu--UGUCG----CGCGUUG-GGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 24186 0.75 0.202124
Target:  5'- gGCCCAAAACAGCG-GC-ACCUaugacgGCGCa -3'
miRNA:   3'- -CGGGUUUUGUCGCgCGuUGGG------CGCGc -5'
13001 5' -56.7 NC_003387.1 + 24456 0.68 0.4927
Target:  5'- aGCCgAcGAGCAGCGCGaggugcugAACCUGCuGCGc -3'
miRNA:   3'- -CGGgU-UUUGUCGCGCg-------UUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 25125 0.66 0.642692
Target:  5'- gGCCCucguacCAGCG-GCAcaCCGCGCa -3'
miRNA:   3'- -CGGGuuuu--GUCGCgCGUugGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 25175 0.71 0.33509
Target:  5'- gGCCCGAGGCGGUcaGCgaggcucauacagGCAACCuCGCgGCGg -3'
miRNA:   3'- -CGGGUUUUGUCG--CG-------------CGUUGG-GCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 25434 0.68 0.4927
Target:  5'- uGCUUAucGGAUacucgcagGGCGCGCuGCCCGCGUc -3'
miRNA:   3'- -CGGGU--UUUG--------UCGCGCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 25473 0.72 0.312284
Target:  5'- gGCUCAu-GCGGCGCauccugucggGCGACCUGCaGCGg -3'
miRNA:   3'- -CGGGUuuUGUCGCG----------CGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 25576 0.66 0.631752
Target:  5'- cCCCG--GCGGCGC-CGACCCcgGCGgGc -3'
miRNA:   3'- cGGGUuuUGUCGCGcGUUGGG--CGCgC- -5'
13001 5' -56.7 NC_003387.1 + 25805 0.69 0.439923
Target:  5'- aGCCCGGcgaacaggaacAGCAGCGCGgCGuacGCCaggaaugacggccaCGCGCGa -3'
miRNA:   3'- -CGGGUU-----------UUGUCGCGC-GU---UGG--------------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25903 0.83 0.05122
Target:  5'- cGUCCAGGGCGGCGCGCucaccGACCaccaGCGCGg -3'
miRNA:   3'- -CGGGUUUUGUCGCGCG-----UUGGg---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 26120 0.73 0.275771
Target:  5'- uGCgCCAGGuCGGCGCGUccgucgccGCUCGCGCGg -3'
miRNA:   3'- -CG-GGUUUuGUCGCGCGu-------UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 26568 0.66 0.642692
Target:  5'- cGCCCuugcGGGCGGUGCcggGCAugcugGCUCGUGCu -3'
miRNA:   3'- -CGGGu---UUUGUCGCG---CGU-----UGGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.