miRNA display CGI


Results 61 - 80 of 251 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 39158 0.67 0.534382
Target:  5'- cGCCgAGGGCguguacuggucGGUGCGCGACauuCGCGUGc -3'
miRNA:   3'- -CGGgUUUUG-----------UCGCGCGUUGg--GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 38627 0.66 0.642692
Target:  5'- gGCCCGcAGGCcgcgcuGGCGCuGCAGuuCCgGCGCa -3'
miRNA:   3'- -CGGGU-UUUG------UCGCG-CGUU--GGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 38523 0.66 0.647066
Target:  5'- cGCCCucAAGCucGCGCGCcAucacgacgcccucacGCCCGCGg- -3'
miRNA:   3'- -CGGGu-UUUGu-CGCGCG-U---------------UGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 38450 0.67 0.534382
Target:  5'- gGCCCAcGACuGCGUGUucuGCCCGUu-- -3'
miRNA:   3'- -CGGGUuUUGuCGCGCGu--UGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 38214 0.66 0.619719
Target:  5'- uGCCCGucgggucgaucGACAGCGCGCccuuaguGGCCuCGC-CGa -3'
miRNA:   3'- -CGGGUu----------UUGUCGCGCG-------UUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 37805 0.67 0.545003
Target:  5'- aCCCGcggucgcAGCAGCGCGCGAUcgggCCGaGCGa -3'
miRNA:   3'- cGGGUu------UUGUCGCGCGUUG----GGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 37699 0.73 0.242752
Target:  5'- gGCCUGucGGACGaCGC-CGACCCGCGCGa -3'
miRNA:   3'- -CGGGU--UUUGUcGCGcGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 37267 0.66 0.642692
Target:  5'- gGCCCGcguggcggucaAGGCgccuGGCGCGCucgUCgGCGCGg -3'
miRNA:   3'- -CGGGU-----------UUUG----UCGCGCGuu-GGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 37145 0.66 0.642692
Target:  5'- uGCCCGGcAGCAGCcagGCGCGAaucggcugcaccUCCG-GCGg -3'
miRNA:   3'- -CGGGUU-UUGUCG---CGCGUU------------GGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 36904 0.76 0.172129
Target:  5'- cGCCUcgguGACGcuguGCGCGUAGCCCaGCGCGa -3'
miRNA:   3'- -CGGGuu--UUGU----CGCGCGUUGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 36860 0.7 0.39502
Target:  5'- aGCCaCAuguAC-GCGCGCAcguugcaGCCCGCGUc -3'
miRNA:   3'- -CGG-GUuu-UGuCGCGCGU-------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 36290 0.68 0.502988
Target:  5'- gGUCCAGAACgcauGGCGCGCAACggauCUGUgaacGCGa -3'
miRNA:   3'- -CGGGUUUUG----UCGCGCGUUG----GGCG----CGC- -5'
13001 5' -56.7 NC_003387.1 + 35859 0.71 0.352351
Target:  5'- cGCCUggGcguGCGGCGC-CAucuCCuCGCGCGg -3'
miRNA:   3'- -CGGGuuU---UGUCGCGcGUu--GG-GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 35823 0.67 0.588089
Target:  5'- gGCCgGGuacuGCAGCGCGUcggcuAugUCGUGCa -3'
miRNA:   3'- -CGGgUUu---UGUCGCGCG-----UugGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 35748 0.7 0.386936
Target:  5'- cGCCCGcAACAucuaCGCGCAcCCCGUuuGCGa -3'
miRNA:   3'- -CGGGUuUUGUc---GCGCGUuGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 35727 0.66 0.641599
Target:  5'- cGCCCGcu-CGGgGUcgaugacGCAGCCCGCccGCGc -3'
miRNA:   3'- -CGGGUuuuGUCgCG-------CGUUGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 35690 0.67 0.545003
Target:  5'- cGCCCGGcGAgGGCG-GCAGCCgC-CGCGg -3'
miRNA:   3'- -CGGGUU-UUgUCGCgCGUUGG-GcGCGC- -5'
13001 5' -56.7 NC_003387.1 + 35555 0.75 0.181658
Target:  5'- cGCCC-AGGCGGCGCacCAGCUCaGCGCGg -3'
miRNA:   3'- -CGGGuUUUGUCGCGc-GUUGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 35441 0.68 0.4927
Target:  5'- aCCCGgcuaaagacguuGGACgAGCGCGCAGUCCGCGa- -3'
miRNA:   3'- cGGGU------------UUUG-UCGCGCGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 34599 0.69 0.462444
Target:  5'- uGCCCGGugacguACGGCGUccacGCAuaauCCUGCGCc -3'
miRNA:   3'- -CGGGUUu-----UGUCGCG----CGUu---GGGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.