miRNA display CGI


Results 81 - 100 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 34505 0.67 0.534382
Target:  5'- cGCCCGccgcuGCGGCGcCGCGAUCCuCGgGc -3'
miRNA:   3'- -CGGGUuu---UGUCGC-GCGUUGGGcGCgC- -5'
13001 5' -56.7 NC_003387.1 + 34306 0.77 0.150235
Target:  5'- uGCCC-GAGCAGCccGCGCuGCCCGCGg- -3'
miRNA:   3'- -CGGGuUUUGUCG--CGCGuUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 34167 0.68 0.4927
Target:  5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3'
miRNA:   3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 34020 0.72 0.312284
Target:  5'- cGCCCu-GGCGcUGCGCGACCCGCa-- -3'
miRNA:   3'- -CGGGuuUUGUcGCGCGUUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 33435 0.7 0.378083
Target:  5'- uGCCUGcuGCuGCGCGCcaccACCuCGCGCa -3'
miRNA:   3'- -CGGGUuuUGuCGCGCGu---UGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 33300 0.67 0.566441
Target:  5'- cGCCCugugGGACGGUGUaaguGCCCGCGaCGu -3'
miRNA:   3'- -CGGGu---UUUGUCGCGcgu-UGGGCGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 33203 0.68 0.523834
Target:  5'- cGCgCAGcGCaAGCGCGaGGCCCGCucgGCGa -3'
miRNA:   3'- -CGgGUUuUG-UCGCGCgUUGGGCG---CGC- -5'
13001 5' -56.7 NC_003387.1 + 32845 0.7 0.405048
Target:  5'- gGCCCAGcACGGUGUcuuGCAgggcGCCCaGCGCc -3'
miRNA:   3'- -CGGGUUuUGUCGCG---CGU----UGGG-CGCGc -5'
13001 5' -56.7 NC_003387.1 + 32805 0.71 0.351515
Target:  5'- aCCUGGcGCAGCucaagcaaucucaGCGCAGCCCGCaccGCGg -3'
miRNA:   3'- cGGGUUuUGUCG-------------CGCGUUGGGCG---CGC- -5'
13001 5' -56.7 NC_003387.1 + 32528 0.7 0.41337
Target:  5'- cGCCCGgccgugcGAggcGCAGCaGCGCAucaaCCGCGCc -3'
miRNA:   3'- -CGGGU-------UU---UGUCG-CGCGUug--GGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 31110 0.73 0.248442
Target:  5'- uGCCCGAucaugugcaccAGCAGCGcCGCgucggccucgcugAugCCGCGCGc -3'
miRNA:   3'- -CGGGUU-----------UUGUCGC-GCG-------------UugGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 31027 0.68 0.513367
Target:  5'- uGCgCCGGGGCGGCGgccaGCAcggcACCgGCGCc -3'
miRNA:   3'- -CG-GGUUUUGUCGCg---CGU----UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 30851 0.7 0.369367
Target:  5'- cGCCCAuAGCAGCucguGCGCGucggcACCUgGUGCGc -3'
miRNA:   3'- -CGGGUuUUGUCG----CGCGU-----UGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 30756 0.69 0.461452
Target:  5'- cGCaCCGuaguuGAACAGCGcCGCAgacgccuGCCCGcCGCc -3'
miRNA:   3'- -CG-GGU-----UUUGUCGC-GCGU-------UGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 30623 0.67 0.566441
Target:  5'- cGCCgGGGAUGGCGcCGUAcguGCCCcacGCGCu -3'
miRNA:   3'- -CGGgUUUUGUCGC-GCGU---UGGG---CGCGc -5'
13001 5' -56.7 NC_003387.1 + 30606 0.68 0.523834
Target:  5'- gGCCaCAucACGaCGCacgGCAACCUGCGCa -3'
miRNA:   3'- -CGG-GUuuUGUcGCG---CGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 30274 0.7 0.414301
Target:  5'- aCCgCGAGGCcaacGC-CGCGGCCCGCGCc -3'
miRNA:   3'- cGG-GUUUUGu---CGcGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 29754 0.66 0.642692
Target:  5'- cGCCCGAcacgauGAcCGGgGCGCcccacgcggucAGCuuGCGCGu -3'
miRNA:   3'- -CGGGUU------UU-GUCgCGCG-----------UUGggCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 29472 0.7 0.414301
Target:  5'- gGCgCCAgcGAGCAGgGCaCGGCCCGCGa- -3'
miRNA:   3'- -CG-GGU--UUUGUCgCGcGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 29405 0.76 0.170738
Target:  5'- cGCCCGccgggcgcaggaggAGGCcGcCGCaGCGGCCCGCGCGg -3'
miRNA:   3'- -CGGGU--------------UUUGuC-GCG-CGUUGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.