miRNA display CGI


Results 101 - 120 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 29201 0.67 0.588089
Target:  5'- gGCCCGAGGCaagcaGGUGCGCAucgacgGCaaggUGCGCa -3'
miRNA:   3'- -CGGGUUUUG-----UCGCGCGU------UGg---GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 28828 0.67 0.566441
Target:  5'- aGCCCcu--CGGCGCGCAGCaCGUcgGCc -3'
miRNA:   3'- -CGGGuuuuGUCGCGCGUUGgGCG--CGc -5'
13001 5' -56.7 NC_003387.1 + 28762 0.66 0.642692
Target:  5'- cGCCCGGcGCuGCGCaCGugCUGCaGCa -3'
miRNA:   3'- -CGGGUUuUGuCGCGcGUugGGCG-CGc -5'
13001 5' -56.7 NC_003387.1 + 28369 0.67 0.534382
Target:  5'- uGUCgCAGGGCGG-GCGCAACUCGUGg- -3'
miRNA:   3'- -CGG-GUUUUGUCgCGCGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 28112 0.68 0.468418
Target:  5'- cGCCCA----GGCGCGCAAgcucaaucguguaCUGCGCGu -3'
miRNA:   3'- -CGGGUuuugUCGCGCGUUg------------GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 28065 0.71 0.320013
Target:  5'- aCCCu---CGGCGCugGCGACCuCGCGCa -3'
miRNA:   3'- cGGGuuuuGUCGCG--CGUUGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 27926 0.72 0.297254
Target:  5'- uGCgCCAGGuCGGC-CGCGACCCGaGCGg -3'
miRNA:   3'- -CG-GGUUUuGUCGcGCGUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 27888 0.67 0.566441
Target:  5'- aCCCGgccgcAGACAGCGCacacGCGGCCUugaccggcgGCGUGg -3'
miRNA:   3'- cGGGU-----UUUGUCGCG----CGUUGGG---------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 27832 0.66 0.604424
Target:  5'- cGCCCGucggucgaguucGACAGC-CGCGgcgccacgaucgacACCgGCGCGg -3'
miRNA:   3'- -CGGGUu-----------UUGUCGcGCGU--------------UGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 27270 0.68 0.502988
Target:  5'- aGCCgCGAcgcgGGCAGCGCGC--CCUGCGa- -3'
miRNA:   3'- -CGG-GUU----UUGUCGCGCGuuGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 27179 0.71 0.358243
Target:  5'- uGCCCcu--CGGCgugugguggcgcgaGCGCAACCgGCGCa -3'
miRNA:   3'- -CGGGuuuuGUCG--------------CGCGUUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 26568 0.66 0.642692
Target:  5'- cGCCCuugcGGGCGGUGCcggGCAugcugGCUCGUGCu -3'
miRNA:   3'- -CGGGu---UUUGUCGCG---CGU-----UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 26120 0.73 0.275771
Target:  5'- uGCgCCAGGuCGGCGCGUccgucgccGCUCGCGCGg -3'
miRNA:   3'- -CG-GGUUUuGUCGCGCGu-------UGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25903 0.83 0.05122
Target:  5'- cGUCCAGGGCGGCGCGCucaccGACCaccaGCGCGg -3'
miRNA:   3'- -CGGGUUUUGUCGCGCG-----UUGGg---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25805 0.69 0.439923
Target:  5'- aGCCCGGcgaacaggaacAGCAGCGCGgCGuacGCCaggaaugacggccaCGCGCGa -3'
miRNA:   3'- -CGGGUU-----------UUGUCGCGC-GU---UGG--------------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25576 0.66 0.631752
Target:  5'- cCCCG--GCGGCGC-CGACCCcgGCGgGc -3'
miRNA:   3'- cGGGUuuUGUCGCGcGUUGGG--CGCgC- -5'
13001 5' -56.7 NC_003387.1 + 25473 0.72 0.312284
Target:  5'- gGCUCAu-GCGGCGCauccugucggGCGACCUGCaGCGg -3'
miRNA:   3'- -CGGGUuuUGUCGCG----------CGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 25434 0.68 0.4927
Target:  5'- uGCUUAucGGAUacucgcagGGCGCGCuGCCCGCGUc -3'
miRNA:   3'- -CGGGU--UUUG--------UCGCGCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 25175 0.71 0.33509
Target:  5'- gGCCCGAGGCGGUcaGCgaggcucauacagGCAACCuCGCgGCGg -3'
miRNA:   3'- -CGGGUUUUGUCG--CG-------------CGUUGG-GCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 25125 0.66 0.642692
Target:  5'- gGCCCucguacCAGCG-GCAcaCCGCGCa -3'
miRNA:   3'- -CGGGuuuu--GUCGCgCGUugGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.