miRNA display CGI


Results 41 - 60 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 33435 0.7 0.378083
Target:  5'- uGCCUGcuGCuGCGCGCcaccACCuCGCGCa -3'
miRNA:   3'- -CGGGUuuUGuCGCGCGu---UGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 22938 0.72 0.297254
Target:  5'- cGCCgGAuACA-CGCGCAGCugaCCGCGUGg -3'
miRNA:   3'- -CGGgUUuUGUcGCGCGUUG---GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 25903 0.83 0.05122
Target:  5'- cGUCCAGGGCGGCGCGCucaccGACCaccaGCGCGg -3'
miRNA:   3'- -CGGGUUUUGUCGCGCG-----UUGGg---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 30851 0.7 0.369367
Target:  5'- cGCCCAuAGCAGCucguGCGCGucggcACCUgGUGCGc -3'
miRNA:   3'- -CGGGUuUUGUCG----CGCGU-----UGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 48140 0.83 0.049757
Target:  5'- aCCCGcgcGCAGCGCGCcaccgaGGCCCGCGCGg -3'
miRNA:   3'- cGGGUuu-UGUCGCGCG------UUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 19302 0.69 0.466422
Target:  5'- aGCCCGAucCAGCucgGCGUGACCgaguacagcgacgaGCGCGg -3'
miRNA:   3'- -CGGGUUuuGUCG---CGCGUUGGg-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 21691 0.78 0.123145
Target:  5'- cGCCCuggccgccuCGGCgaGCGCGGCCCGCGCc -3'
miRNA:   3'- -CGGGuuuu-----GUCG--CGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 45517 0.69 0.452576
Target:  5'- gGCCgCAGcgagcuGACGGUGUGCuGgCCGUGCGg -3'
miRNA:   3'- -CGG-GUU------UUGUCGCGCGuUgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 23044 0.69 0.440889
Target:  5'- uGCCCG--GCGGCGUGCcgaucacgcacuACgCCGUGCGc -3'
miRNA:   3'- -CGGGUuuUGUCGCGCGu-----------UG-GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 2422 0.7 0.41337
Target:  5'- cGCCUggGAGAUguGGCaGCGCAACCgcauggaCGCGCGc -3'
miRNA:   3'- -CGGG--UUUUG--UCG-CGCGUUGG-------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 18039 0.7 0.399558
Target:  5'- uGCCCGAGGCGGCGUuucagaacuucaccgGCGuuGCCCaGCgGCa -3'
miRNA:   3'- -CGGGUUUUGUCGCG---------------CGU--UGGG-CG-CGc -5'
13001 5' -56.7 NC_003387.1 + 2934 0.7 0.395925
Target:  5'- uGUCgCGGuuCGGCGC-CAACCCGCaGCGc -3'
miRNA:   3'- -CGG-GUUuuGUCGCGcGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 23409 0.7 0.386936
Target:  5'- uGCCCGAca-AGCGCGgcGCCUGCGUc -3'
miRNA:   3'- -CGGGUUuugUCGCGCguUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 40829 0.71 0.360789
Target:  5'- gGCaCAAGACGGCGC-CGAUCgUGCGCGa -3'
miRNA:   3'- -CGgGUUUUGUCGCGcGUUGG-GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 15125 0.71 0.352351
Target:  5'- cGCCUGAccCuGUGCGCGACCCGauugcCGCGu -3'
miRNA:   3'- -CGGGUUuuGuCGCGCGUUGGGC-----GCGC- -5'
13001 5' -56.7 NC_003387.1 + 45936 0.71 0.335898
Target:  5'- uGCCCG----AGCGUGUucgccgacGGCCCGCGCa -3'
miRNA:   3'- -CGGGUuuugUCGCGCG--------UUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 25473 0.72 0.312284
Target:  5'- gGCUCAu-GCGGCGCauccugucggGCGACCUGCaGCGg -3'
miRNA:   3'- -CGGGUuuUGUCGCG----------CGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 43668 0.72 0.289952
Target:  5'- cGCCgAGGAgGGCGaCGCGAUCCugGCGUGg -3'
miRNA:   3'- -CGGgUUUUgUCGC-GCGUUGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 17160 0.74 0.21309
Target:  5'- gGCCCGcgcuGAGCuGGUGCGCcGCCUGgGCGg -3'
miRNA:   3'- -CGGGU----UUUG-UCGCGCGuUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 1495 0.76 0.158672
Target:  5'- gGCCCAAGGuCAGCGUGCAccaGCCgGuCGUGa -3'
miRNA:   3'- -CGGGUUUU-GUCGCGCGU---UGGgC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.