miRNA display CGI


Results 61 - 80 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 23409 0.7 0.386936
Target:  5'- uGCCCGAca-AGCGCGgcGCCUGCGUc -3'
miRNA:   3'- -CGGGUUuugUCGCGCguUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 44744 0.7 0.395925
Target:  5'- gGCgCCGAAgcGCAGCaCGCcGCCCGcCGUGa -3'
miRNA:   3'- -CG-GGUUU--UGUCGcGCGuUGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 34306 0.77 0.150235
Target:  5'- uGCCC-GAGCAGCccGCGCuGCCCGCGg- -3'
miRNA:   3'- -CGGGuUUUGUCG--CGCGuUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 29405 0.76 0.170738
Target:  5'- cGCCCGccgggcgcaggaggAGGCcGcCGCaGCGGCCCGCGCGg -3'
miRNA:   3'- -CGGGU--------------UUUGuC-GCG-CGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 37699 0.73 0.242752
Target:  5'- gGCCUGucGGACGaCGC-CGACCCGCGCGa -3'
miRNA:   3'- -CGGGU--UUUGUcGCGcGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 4290 0.72 0.289952
Target:  5'- gGCCgCGggcGAGCAGCGCaccGCGACCCG-GCa -3'
miRNA:   3'- -CGG-GU---UUUGUCGCG---CGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 34020 0.72 0.312284
Target:  5'- cGCCCu-GGCGcUGCGCGACCCGCa-- -3'
miRNA:   3'- -CGGGuuUUGUcGCGCGUUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 42895 0.71 0.344054
Target:  5'- gGCCgGGGGcCAGCacaaaaGCGCAGCCUGCaGCGc -3'
miRNA:   3'- -CGGgUUUU-GUCG------CGCGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 27179 0.71 0.358243
Target:  5'- uGCCCcu--CGGCgugugguggcgcgaGCGCAACCgGCGCa -3'
miRNA:   3'- -CGGGuuuuGUCG--------------CGCGUUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 124 0.71 0.360789
Target:  5'- cGCCuCGAuGCGGuCGCccucGCGAUCCGCGCc -3'
miRNA:   3'- -CGG-GUUuUGUC-GCG----CGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 33203 0.68 0.523834
Target:  5'- cGCgCAGcGCaAGCGCGaGGCCCGCucgGCGa -3'
miRNA:   3'- -CGgGUUuUG-UCGCGCgUUGGGCG---CGC- -5'
13001 5' -56.7 NC_003387.1 + 49756 0.68 0.513367
Target:  5'- gGCCCcGAGCGaggcccauGCGCGUuACCUGCGg- -3'
miRNA:   3'- -CGGGuUUUGU--------CGCGCGuUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 5791 0.7 0.41337
Target:  5'- -aCCAGAACAagccGCccgcaccaccgaaGCGCAAcCCCGCGCa -3'
miRNA:   3'- cgGGUUUUGU----CG-------------CGCGUU-GGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 30274 0.7 0.414301
Target:  5'- aCCgCGAGGCcaacGC-CGCGGCCCGCGCc -3'
miRNA:   3'- cGG-GUUUUGu---CGcGCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 45517 0.69 0.452576
Target:  5'- gGCCgCAGcgagcuGACGGUGUGCuGgCCGUGCGg -3'
miRNA:   3'- -CGG-GUU------UUGUCGCGCGuUgGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 19302 0.69 0.466422
Target:  5'- aGCCCGAucCAGCucgGCGUGACCgaguacagcgacgaGCGCGg -3'
miRNA:   3'- -CGGGUUuuGUCG---CGCGUUGGg-------------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 45834 0.68 0.472423
Target:  5'- gGCCCGcGACGaCGcCGCGGagauCCUGCGCGa -3'
miRNA:   3'- -CGGGUuUUGUcGC-GCGUU----GGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 24456 0.68 0.4927
Target:  5'- aGCCgAcGAGCAGCGCGaggugcugAACCUGCuGCGc -3'
miRNA:   3'- -CGGgU-UUUGUCGCGCg-------UUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 35441 0.68 0.4927
Target:  5'- aCCCGgcuaaagacguuGGACgAGCGCGCAGUCCGCGa- -3'
miRNA:   3'- cGGGU------------UUUG-UCGCGCGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 52658 0.68 0.502988
Target:  5'- cGCCC---GCGGCGC-CGAUCgaGCGCGu -3'
miRNA:   3'- -CGGGuuuUGUCGCGcGUUGGg-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.