miRNA display CGI


Results 101 - 120 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 45403 0.67 0.549271
Target:  5'- cGCCCGAgccgaucguGACGGUuuacgacaaggacauGCGCAagcucgccggGCCUGCGCc -3'
miRNA:   3'- -CGGGUU---------UUGUCG---------------CGCGU----------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 8047 0.67 0.577243
Target:  5'- aGCCUAucugcucGACgAGCuG-GCGGCCCGCGCu -3'
miRNA:   3'- -CGGGUu------UUG-UCG-CgCGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 29201 0.67 0.588089
Target:  5'- gGCCCGAGGCaagcaGGUGCGCAucgacgGCaaggUGCGCa -3'
miRNA:   3'- -CGGGUUUUG-----UCGCGCGU------UGg---GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 14281 0.67 0.592438
Target:  5'- aGCCCGAgcGcgucgacuauaaaaaGCGGCGCauCAACCUGgGCGu -3'
miRNA:   3'- -CGGGUU--U---------------UGUCGCGc-GUUGGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 48842 0.66 0.598972
Target:  5'- gGCgCGAcgcACGGCGUGCAcGCCCugGUGCGc -3'
miRNA:   3'- -CGgGUUu--UGUCGCGCGU-UGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 11418 0.68 0.472423
Target:  5'- gGCCCcGAGguGCugucgucgGUGCucguGCCCGCGCu -3'
miRNA:   3'- -CGGGuUUUguCG--------CGCGu---UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 11577 0.69 0.462444
Target:  5'- gGCaCCAAGgcguACGGCGuCGCGAUggCCGUGUGg -3'
miRNA:   3'- -CG-GGUUU----UGUCGC-GCGUUG--GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 34306 0.77 0.150235
Target:  5'- uGCCC-GAGCAGCccGCGCuGCCCGCGg- -3'
miRNA:   3'- -CGGGuUUUGUCG--CGCGuUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 29405 0.76 0.170738
Target:  5'- cGCCCGccgggcgcaggaggAGGCcGcCGCaGCGGCCCGCGCGg -3'
miRNA:   3'- -CGGGU--------------UUUGuC-GCG-CGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 37699 0.73 0.242752
Target:  5'- gGCCUGucGGACGaCGC-CGACCCGCGCGa -3'
miRNA:   3'- -CGGGU--UUUGUcGCGcGUUGGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 4290 0.72 0.289952
Target:  5'- gGCCgCGggcGAGCAGCGCaccGCGACCCG-GCa -3'
miRNA:   3'- -CGG-GU---UUUGUCGCG---CGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 34020 0.72 0.312284
Target:  5'- cGCCCu-GGCGcUGCGCGACCCGCa-- -3'
miRNA:   3'- -CGGGuuUUGUcGCGCGUUGGGCGcgc -5'
13001 5' -56.7 NC_003387.1 + 42895 0.71 0.344054
Target:  5'- gGCCgGGGGcCAGCacaaaaGCGCAGCCUGCaGCGc -3'
miRNA:   3'- -CGGgUUUU-GUCG------CGCGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 27179 0.71 0.358243
Target:  5'- uGCCCcu--CGGCgugugguggcgcgaGCGCAACCgGCGCa -3'
miRNA:   3'- -CGGGuuuuGUCG--------------CGCGUUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 124 0.71 0.360789
Target:  5'- cGCCuCGAuGCGGuCGCccucGCGAUCCGCGCc -3'
miRNA:   3'- -CGG-GUUuUGUC-GCG----CGUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 35748 0.7 0.386936
Target:  5'- cGCCCGcAACAucuaCGCGCAcCCCGUuuGCGa -3'
miRNA:   3'- -CGGGUuUUGUc---GCGCGUuGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 21577 0.7 0.395925
Target:  5'- gGCCCA----GGCGCGCGGCaucagcgaggCCGaCGCGg -3'
miRNA:   3'- -CGGGUuuugUCGCGCGUUG----------GGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 32528 0.7 0.41337
Target:  5'- cGCCCGgccgugcGAggcGCAGCaGCGCAucaaCCGCGCc -3'
miRNA:   3'- -CGGGU-------UU---UGUCG-CGCGUug--GGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 29472 0.7 0.414301
Target:  5'- gGCgCCAgcGAGCAGgGCaCGGCCCGCGa- -3'
miRNA:   3'- -CG-GGU--UUUGUCgCGcGUUGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 15887 0.69 0.450617
Target:  5'- uGCCCGAggacgagGACAGCcCGCAcCCCGagcuggcCGCGa -3'
miRNA:   3'- -CGGGUU-------UUGUCGcGCGUuGGGC-------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.