miRNA display CGI


Results 121 - 140 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 11577 0.69 0.462444
Target:  5'- gGCaCCAAGgcguACGGCGuCGCGAUggCCGUGUGg -3'
miRNA:   3'- -CG-GGUUU----UGUCGC-GCGUUG--GGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 11418 0.68 0.472423
Target:  5'- gGCCCcGAGguGCugucgucgGUGCucguGCCCGCGCu -3'
miRNA:   3'- -CGGGuUUUguCG--------CGCGu---UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 48875 0.68 0.502988
Target:  5'- aGCCgGAucguCGGCGcCGCcuaCCGCGCGc -3'
miRNA:   3'- -CGGgUUuu--GUCGC-GCGuugGGCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 4199 0.68 0.481497
Target:  5'- cGCCCGAcuacgugcAGCAGUGggaGCAggauuaccugcagGCCCGcCGCGa -3'
miRNA:   3'- -CGGGUU--------UUGUCGCg--CGU-------------UGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 25434 0.68 0.4927
Target:  5'- uGCUUAucGGAUacucgcagGGCGCGCuGCCCGCGUc -3'
miRNA:   3'- -CGGGU--UUUG--------UCGCGCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 34167 0.68 0.4927
Target:  5'- cGCCCucGGCcuuGCGCucgaaCGACUCGCGCa -3'
miRNA:   3'- -CGGGuuUUGu--CGCGc----GUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 10501 0.77 0.140651
Target:  5'- cGCCCAucGCGGUGCGCcggucgccguccuGCUCGCGCa -3'
miRNA:   3'- -CGGGUuuUGUCGCGCGu------------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 13578 0.77 0.146172
Target:  5'- cGCCCu---CGGCGCGgAACCUGUGCu -3'
miRNA:   3'- -CGGGuuuuGUCGCGCgUUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 36290 0.68 0.502988
Target:  5'- gGUCCAGAACgcauGGCGCGCAACggauCUGUgaacGCGa -3'
miRNA:   3'- -CGGGUUUUG----UCGCGCGUUG----GGCG----CGC- -5'
13001 5' -56.7 NC_003387.1 + 44351 0.68 0.4927
Target:  5'- cGUCCAGAACAccGCGgccUGCAugCCGaacaGCGg -3'
miRNA:   3'- -CGGGUUUUGU--CGC---GCGUugGGCg---CGC- -5'
13001 5' -56.7 NC_003387.1 + 27270 0.68 0.502988
Target:  5'- aGCCgCGAcgcgGGCAGCGCGC--CCUGCGa- -3'
miRNA:   3'- -CGG-GUU----UUGUCGCGCGuuGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 15364 0.81 0.074478
Target:  5'- cGCCCGAcaggugccGCAGauaGCGCAGCCCGCgGCGg -3'
miRNA:   3'- -CGGGUUu-------UGUCg--CGCGUUGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 6289 0.67 0.592438
Target:  5'- uCCCGAGuguugauuggucaacAcCGGCGaCGUuACCCGCGCa -3'
miRNA:   3'- cGGGUUU---------------U-GUCGC-GCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 4328 0.73 0.242752
Target:  5'- uGCCC-AGGCuGCGCcCGGCCCGCuuGCGa -3'
miRNA:   3'- -CGGGuUUUGuCGCGcGUUGGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 8193 0.74 0.218762
Target:  5'- aGCCCu--GCGGCGCcggGCGGCCCG-GCa -3'
miRNA:   3'- -CGGGuuuUGUCGCG---CGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 14085 0.75 0.202124
Target:  5'- cGCCgGAAcuGCAGCgccaGCGCGGCCUGCGgGc -3'
miRNA:   3'- -CGGgUUU--UGUCG----CGCGUUGGGCGCgC- -5'
13001 5' -56.7 NC_003387.1 + 35555 0.75 0.181658
Target:  5'- cGCCC-AGGCGGCGCacCAGCUCaGCGCGg -3'
miRNA:   3'- -CGGGuUUUGUCGCGc-GUUGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 36904 0.76 0.172129
Target:  5'- cGCCUcgguGACGcuguGCGCGUAGCCCaGCGCGa -3'
miRNA:   3'- -CGGGuu--UUGU----CGCGCGUUGGG-CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 43143 0.66 0.620813
Target:  5'- cGCUCAAggucgGACAgGUGCGCGugCUG-GCGa -3'
miRNA:   3'- -CGGGUU-----UUGU-CGCGCGUugGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 6847 0.78 0.113889
Target:  5'- cGCCCGcucggccGCGGCGCGCAGCCgcagcagcuCGCGCa -3'
miRNA:   3'- -CGGGUuu-----UGUCGCGCGUUGG---------GCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.