miRNA display CGI


Results 41 - 60 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 21973 0.66 0.642692
Target:  5'- cGCCCGAcACGGUGCu--GCCCGacgaGCc -3'
miRNA:   3'- -CGGGUUuUGUCGCGcguUGGGCg---CGc -5'
13001 5' -56.7 NC_003387.1 + 29754 0.66 0.642692
Target:  5'- cGCCCGAcacgauGAcCGGgGCGCcccacgcggucAGCuuGCGCGu -3'
miRNA:   3'- -CGGGUU------UU-GUCgCGCG-----------UUGggCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 7840 0.66 0.642692
Target:  5'- cGCCCG--GCGGCuGCGuCAGCUCG-GCc -3'
miRNA:   3'- -CGGGUuuUGUCG-CGC-GUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 18697 0.66 0.642692
Target:  5'- -aCCAGGuGCGGguCGCGCAGCgCCaggGCGCGg -3'
miRNA:   3'- cgGGUUU-UGUC--GCGCGUUG-GG---CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 38523 0.66 0.647066
Target:  5'- cGCCCucAAGCucGCGCGCcAucacgacgcccucacGCCCGCGg- -3'
miRNA:   3'- -CGGGu-UUUGu-CGCGCG-U---------------UGGGCGCgc -5'
13001 5' -56.7 NC_003387.1 + 43143 0.66 0.620813
Target:  5'- cGCUCAAggucgGACAgGUGCGCGugCUG-GCGa -3'
miRNA:   3'- -CGGGUU-----UUGU-CGCGCGUugGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 11022 0.66 0.620813
Target:  5'- cGCCUucguCGGCGcCGCGACgCCGgGuCGg -3'
miRNA:   3'- -CGGGuuuuGUCGC-GCGUUG-GGCgC-GC- -5'
13001 5' -56.7 NC_003387.1 + 22554 0.66 0.595704
Target:  5'- uGCCCGAGGCGaucGCGCGgGccuggucgagggugGCCUcgGUGCGg -3'
miRNA:   3'- -CGGGUUUUGU---CGCGCgU--------------UGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22021 0.66 0.597883
Target:  5'- cGCCCc--GCAG-GCGCAcgaaaacgcccccGCCgGUGCGa -3'
miRNA:   3'- -CGGGuuuUGUCgCGCGU-------------UGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3317 0.66 0.598972
Target:  5'- cGCCCAccuccGCAuccGCcuGCGCAGCgUGCGCa -3'
miRNA:   3'- -CGGGUuu---UGU---CG--CGCGUUGgGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 39684 0.66 0.598972
Target:  5'- aGCCUugu-CGGCguuGCGCAGCgaCGUGCGg -3'
miRNA:   3'- -CGGGuuuuGUCG---CGCGUUGg-GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 4905 0.66 0.598972
Target:  5'- uGCCgGGuGCGGUaGCuGCAcuGCCCGgCGCGg -3'
miRNA:   3'- -CGGgUUuUGUCG-CG-CGU--UGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 41272 0.66 0.598972
Target:  5'- cGCCCc-GGCGGCGagcuGCAGCgCGgGCa -3'
miRNA:   3'- -CGGGuuUUGUCGCg---CGUUGgGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 13941 0.66 0.608791
Target:  5'- cGCCgAGGcuguACAGCGUGUGAuugccgcCCCGCGgGc -3'
miRNA:   3'- -CGGgUUU----UGUCGCGCGUU-------GGGCGCgC- -5'
13001 5' -56.7 NC_003387.1 + 44480 0.66 0.609883
Target:  5'- gGCCCcgcacAGCAGCGCGUgcagcaGAUCgGCGUu -3'
miRNA:   3'- -CGGGuu---UUGUCGCGCG------UUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 52228 0.66 0.609883
Target:  5'- cGCCac--GCGGgCGCGCAucgcgacgagcaGCUCGCGCc -3'
miRNA:   3'- -CGGguuuUGUC-GCGCGU------------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 43832 0.66 0.609883
Target:  5'- cGCCgAAAAUGGCgGCGUucACCuCGgGCGa -3'
miRNA:   3'- -CGGgUUUUGUCG-CGCGu-UGG-GCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 12735 0.66 0.614253
Target:  5'- uGCCgucgUAGAACugcggguaaucgucGUGCGCGACCuCGCGCu -3'
miRNA:   3'- -CGG----GUUUUGu-------------CGCGCGUUGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 38214 0.66 0.619719
Target:  5'- uGCCCGucgggucgaucGACAGCGCGCccuuaguGGCCuCGC-CGa -3'
miRNA:   3'- -CGGGUu----------UUGUCGCGCG-------UUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 18465 0.66 0.620813
Target:  5'- cGCCCGAcuCGGCGauCAGCCggucgaGCGCc -3'
miRNA:   3'- -CGGGUUuuGUCGCgcGUUGGg-----CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.