miRNA display CGI


Results 61 - 80 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 43832 0.66 0.609883
Target:  5'- cGCCgAAAAUGGCgGCGUucACCuCGgGCGa -3'
miRNA:   3'- -CGGgUUUUGUCG-CGCGu-UGG-GCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 52228 0.66 0.609883
Target:  5'- cGCCac--GCGGgCGCGCAucgcgacgagcaGCUCGCGCc -3'
miRNA:   3'- -CGGguuuUGUC-GCGCGU------------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 35823 0.67 0.588089
Target:  5'- gGCCgGGuacuGCAGCGCGUcggcuAugUCGUGCa -3'
miRNA:   3'- -CGGgUUu---UGUCGCGCG-----UugGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 18565 0.67 0.588089
Target:  5'- uGCCCAcAGguGCGgGuCGACCCagGCGUc -3'
miRNA:   3'- -CGGGUuUUguCGCgC-GUUGGG--CGCGc -5'
13001 5' -56.7 NC_003387.1 + 19313 0.67 0.587003
Target:  5'- aGCCgCAcAACGGCcucGCGCGugaauguGCCUGCgGCGg -3'
miRNA:   3'- -CGG-GUuUUGUCG---CGCGU-------UGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 20817 0.67 0.577243
Target:  5'- cGCUCGGAGCAGgggauacguCGCGCGACgUCG-GCGa -3'
miRNA:   3'- -CGGGUUUUGUC---------GCGCGUUG-GGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 14726 0.67 0.577243
Target:  5'- gGCUUGcuGCGGuCGCGCAGCCagGCGuCGa -3'
miRNA:   3'- -CGGGUuuUGUC-GCGCGUUGGg-CGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 22397 0.67 0.576161
Target:  5'- gGCaCCAGGAaaaAGCGcCGcCAGCCCugguaauGCGCGu -3'
miRNA:   3'- -CG-GGUUUUg--UCGC-GC-GUUGGG-------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 42690 0.67 0.566441
Target:  5'- cGCCCu---CGGCGCGCuucGGCUCGuCGUc -3'
miRNA:   3'- -CGGGuuuuGUCGCGCG---UUGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 30623 0.67 0.566441
Target:  5'- cGCCgGGGAUGGCGcCGUAcguGCCCcacGCGCu -3'
miRNA:   3'- -CGGgUUUUGUCGC-GCGU---UGGG---CGCGc -5'
13001 5' -56.7 NC_003387.1 + 10729 0.67 0.588089
Target:  5'- gGCCCcaccgcuuGAGCAcCGCgGCGGCCucCGCGCGc -3'
miRNA:   3'- -CGGGu-------UUUGUcGCG-CGUUGG--GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 6289 0.67 0.592438
Target:  5'- uCCCGAGuguugauuggucaacAcCGGCGaCGUuACCCGCGCa -3'
miRNA:   3'- cGGGUUU---------------U-GUCGC-GCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 44480 0.66 0.609883
Target:  5'- gGCCCcgcacAGCAGCGCGUgcagcaGAUCgGCGUu -3'
miRNA:   3'- -CGGGuu---UUGUCGCGCG------UUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 13941 0.66 0.608791
Target:  5'- cGCCgAGGcuguACAGCGUGUGAuugccgcCCCGCGgGc -3'
miRNA:   3'- -CGGgUUU----UGUCGCGCGUU-------GGGCGCgC- -5'
13001 5' -56.7 NC_003387.1 + 41272 0.66 0.598972
Target:  5'- cGCCCc-GGCGGCGagcuGCAGCgCGgGCa -3'
miRNA:   3'- -CGGGuuUUGUCGCg---CGUUGgGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 4905 0.66 0.598972
Target:  5'- uGCCgGGuGCGGUaGCuGCAcuGCCCGgCGCGg -3'
miRNA:   3'- -CGGgUUuUGUCG-CG-CGU--UGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 39684 0.66 0.598972
Target:  5'- aGCCUugu-CGGCguuGCGCAGCgaCGUGCGg -3'
miRNA:   3'- -CGGGuuuuGUCG---CGCGUUGg-GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 3317 0.66 0.598972
Target:  5'- cGCCCAccuccGCAuccGCcuGCGCAGCgUGCGCa -3'
miRNA:   3'- -CGGGUuu---UGU---CG--CGCGUUGgGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 22021 0.66 0.597883
Target:  5'- cGCCCc--GCAG-GCGCAcgaaaacgcccccGCCgGUGCGa -3'
miRNA:   3'- -CGGGuuuUGUCgCGCGU-------------UGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22554 0.66 0.595704
Target:  5'- uGCCCGAGGCGaucGCGCGgGccuggucgagggugGCCUcgGUGCGg -3'
miRNA:   3'- -CGGGUUUUGU---CGCGCgU--------------UGGG--CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.