miRNA display CGI


Results 81 - 100 of 251 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 18039 0.67 0.566441
Target:  5'- gGCCC---ACGGCGUGUuuuucgucgGGCUCGUGCa -3'
miRNA:   3'- -CGGGuuuUGUCGCGCG---------UUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 16530 0.67 0.566441
Target:  5'- gGCgCCAcAGCAGCGCGUacagguggcaGAUCgGgGCGg -3'
miRNA:   3'- -CG-GGUuUUGUCGCGCG----------UUGGgCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 9662 0.67 0.566441
Target:  5'- aGCCCucgGGGCGGUGCGggguCAGCUCGCcCGu -3'
miRNA:   3'- -CGGGu--UUUGUCGCGC----GUUGGGCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 23839 0.67 0.555692
Target:  5'- cGCgCCGGGACucGGCGC-CGugCCGCucGCGg -3'
miRNA:   3'- -CG-GGUUUUG--UCGCGcGUugGGCG--CGC- -5'
13001 5' -56.7 NC_003387.1 + 41017 0.67 0.555692
Target:  5'- cGCCCAAaucgcGACAGCGaGCccGACgaCCGCgGCGa -3'
miRNA:   3'- -CGGGUU-----UUGUCGCgCG--UUG--GGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 18412 0.67 0.55462
Target:  5'- gGCCgcGGGCAGCGCgggcugcucggGCAGCCacguguaCGCGCGc -3'
miRNA:   3'- -CGGguUUUGUCGCG-----------CGUUGG-------GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 40340 0.67 0.545003
Target:  5'- cGCCUgcAGCAGCGgcagauUGCGGgCCGuCGCGg -3'
miRNA:   3'- -CGGGuuUUGUCGC------GCGUUgGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 30623 0.67 0.566441
Target:  5'- cGCCgGGGAUGGCGcCGUAcguGCCCcacGCGCu -3'
miRNA:   3'- -CGGgUUUUGUCGC-GCGU---UGGG---CGCGc -5'
13001 5' -56.7 NC_003387.1 + 42690 0.67 0.566441
Target:  5'- cGCCCu---CGGCGCGCuucGGCUCGuCGUc -3'
miRNA:   3'- -CGGGuuuuGUCGCGCG---UUGGGC-GCGc -5'
13001 5' -56.7 NC_003387.1 + 22397 0.67 0.576161
Target:  5'- gGCaCCAGGAaaaAGCGcCGcCAGCCCugguaauGCGCGu -3'
miRNA:   3'- -CG-GGUUUUg--UCGC-GC-GUUGGG-------CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22021 0.66 0.597883
Target:  5'- cGCCCc--GCAG-GCGCAcgaaaacgcccccGCCgGUGCGa -3'
miRNA:   3'- -CGGGuuuUGUCgCGCGU-------------UGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 22554 0.66 0.595704
Target:  5'- uGCCCGAGGCGaucGCGCGgGccuggucgagggugGCCUcgGUGCGg -3'
miRNA:   3'- -CGGGUUUUGU---CGCGCgU--------------UGGG--CGCGC- -5'
13001 5' -56.7 NC_003387.1 + 6289 0.67 0.592438
Target:  5'- uCCCGAGuguugauuggucaacAcCGGCGaCGUuACCCGCGCa -3'
miRNA:   3'- cGGGUUU---------------U-GUCGC-GCGuUGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 10729 0.67 0.588089
Target:  5'- gGCCCcaccgcuuGAGCAcCGCgGCGGCCucCGCGCGc -3'
miRNA:   3'- -CGGGu-------UUUGUcGCG-CGUUGG--GCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 35823 0.67 0.588089
Target:  5'- gGCCgGGuacuGCAGCGCGUcggcuAugUCGUGCa -3'
miRNA:   3'- -CGGgUUu---UGUCGCGCG-----UugGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 18565 0.67 0.588089
Target:  5'- uGCCCAcAGguGCGgGuCGACCCagGCGUc -3'
miRNA:   3'- -CGGGUuUUguCGCgC-GUUGGG--CGCGc -5'
13001 5' -56.7 NC_003387.1 + 19313 0.67 0.587003
Target:  5'- aGCCgCAcAACGGCcucGCGCGugaauguGCCUGCgGCGg -3'
miRNA:   3'- -CGG-GUuUUGUCG---CGCGU-------UGGGCG-CGC- -5'
13001 5' -56.7 NC_003387.1 + 20817 0.67 0.577243
Target:  5'- cGCUCGGAGCAGgggauacguCGCGCGACgUCG-GCGa -3'
miRNA:   3'- -CGGGUUUUGUC---------GCGCGUUG-GGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 14726 0.67 0.577243
Target:  5'- gGCUUGcuGCGGuCGCGCAGCCagGCGuCGa -3'
miRNA:   3'- -CGGGUuuUGUC-GCGCGUUGGg-CGC-GC- -5'
13001 5' -56.7 NC_003387.1 + 35690 0.67 0.545003
Target:  5'- cGCCCGGcGAgGGCG-GCAGCCgC-CGCGg -3'
miRNA:   3'- -CGGGUU-UUgUCGCgCGUUGG-GcGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.