Results 101 - 120 of 251 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13001 | 5' | -56.7 | NC_003387.1 | + | 19733 | 0.68 | 0.523834 |
Target: 5'- gGCCCGcucGAAC-GCGgGCAcguAgUCGCGCGg -3' miRNA: 3'- -CGGGU---UUUGuCGCgCGU---UgGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 14430 | 0.68 | 0.523834 |
Target: 5'- --aCGAcGACAGCGUGCcg-CCGCGCGg -3' miRNA: 3'- cggGUU-UUGUCGCGCGuugGGCGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 47881 | 0.68 | 0.513367 |
Target: 5'- cGCCaucu-CGGCGUGCAcgucGCCacaaGCGCGu -3' miRNA: 3'- -CGGguuuuGUCGCGCGU----UGGg---CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 20528 | 0.68 | 0.513367 |
Target: 5'- cGCUCGucgguGACGaCGCGCAGCUCG-GCGg -3' miRNA: 3'- -CGGGUu----UUGUcGCGCGUUGGGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 18095 | 0.68 | 0.502988 |
Target: 5'- uGCCCGAGGCuGCGCagguagGCGGCCaUGC-CGg -3' miRNA: 3'- -CGGGUUUUGuCGCG------CGUUGG-GCGcGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 23839 | 0.67 | 0.555692 |
Target: 5'- cGCgCCGGGACucGGCGC-CGugCCGCucGCGg -3' miRNA: 3'- -CG-GGUUUUG--UCGCGcGUugGGCG--CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 9662 | 0.67 | 0.566441 |
Target: 5'- aGCCCucgGGGCGGUGCGggguCAGCUCGCcCGu -3' miRNA: 3'- -CGGGu--UUUGUCGCGC----GUUGGGCGcGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 35823 | 0.67 | 0.588089 |
Target: 5'- gGCCgGGuacuGCAGCGCGUcggcuAugUCGUGCa -3' miRNA: 3'- -CGGgUUu---UGUCGCGCG-----UugGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 18565 | 0.67 | 0.588089 |
Target: 5'- uGCCCAcAGguGCGgGuCGACCCagGCGUc -3' miRNA: 3'- -CGGGUuUUguCGCgC-GUUGGG--CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 19313 | 0.67 | 0.587003 |
Target: 5'- aGCCgCAcAACGGCcucGCGCGugaauguGCCUGCgGCGg -3' miRNA: 3'- -CGG-GUuUUGUCG---CGCGU-------UGGGCG-CGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 20817 | 0.67 | 0.577243 |
Target: 5'- cGCUCGGAGCAGgggauacguCGCGCGACgUCG-GCGa -3' miRNA: 3'- -CGGGUUUUGUC---------GCGCGUUG-GGCgCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 14726 | 0.67 | 0.577243 |
Target: 5'- gGCUUGcuGCGGuCGCGCAGCCagGCGuCGa -3' miRNA: 3'- -CGGGUuuUGUC-GCGCGUUGGg-CGC-GC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 22397 | 0.67 | 0.576161 |
Target: 5'- gGCaCCAGGAaaaAGCGcCGcCAGCCCugguaauGCGCGu -3' miRNA: 3'- -CG-GGUUUUg--UCGC-GC-GUUGGG-------CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 42690 | 0.67 | 0.566441 |
Target: 5'- cGCCCu---CGGCGCGCuucGGCUCGuCGUc -3' miRNA: 3'- -CGGGuuuuGUCGCGCG---UUGGGC-GCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 30623 | 0.67 | 0.566441 |
Target: 5'- cGCCgGGGAUGGCGcCGUAcguGCCCcacGCGCu -3' miRNA: 3'- -CGGgUUUUGUCGC-GCGU---UGGG---CGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 27888 | 0.67 | 0.566441 |
Target: 5'- aCCCGgccgcAGACAGCGCacacGCGGCCUugaccggcgGCGUGg -3' miRNA: 3'- cGGGU-----UUUGUCGCG----CGUUGGG---------CGCGC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 33300 | 0.67 | 0.566441 |
Target: 5'- cGCCCugugGGACGGUGUaaguGCCCGCGaCGu -3' miRNA: 3'- -CGGGu---UUUGUCGCGcgu-UGGGCGC-GC- -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 28828 | 0.67 | 0.566441 |
Target: 5'- aGCCCcu--CGGCGCGCAGCaCGUcgGCc -3' miRNA: 3'- -CGGGuuuuGUCGCGCGUUGgGCG--CGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 18039 | 0.67 | 0.566441 |
Target: 5'- gGCCC---ACGGCGUGUuuuucgucgGGCUCGUGCa -3' miRNA: 3'- -CGGGuuuUGUCGCGCG---------UUGGGCGCGc -5' |
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13001 | 5' | -56.7 | NC_003387.1 | + | 16530 | 0.67 | 0.566441 |
Target: 5'- gGCgCCAcAGCAGCGCGUacagguggcaGAUCgGgGCGg -3' miRNA: 3'- -CG-GGUuUUGUCGCGCG----------UUGGgCgCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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