miRNA display CGI


Results 21 - 40 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13001 5' -56.7 NC_003387.1 + 48245 0.66 0.620813
Target:  5'- cGCCCGGucGGCcGCGgccaGCAGCUCGgGCu -3'
miRNA:   3'- -CGGGUU--UUGuCGCg---CGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 7745 0.66 0.620813
Target:  5'- cGCCuCGGcggcAGCGGCGauCGCGGCCUGagcCGCGg -3'
miRNA:   3'- -CGG-GUU----UUGUCGC--GCGUUGGGC---GCGC- -5'
13001 5' -56.7 NC_003387.1 + 18465 0.66 0.620813
Target:  5'- cGCCCGAcuCGGCGauCAGCCggucgaGCGCc -3'
miRNA:   3'- -CGGGUUuuGUCGCgcGUUGGg-----CGCGc -5'
13001 5' -56.7 NC_003387.1 + 174 0.66 0.620813
Target:  5'- gGCCgacggCAAGACGGUGCucgacuCGGCCCGCGaCa -3'
miRNA:   3'- -CGG-----GUUUUGUCGCGc-----GUUGGGCGC-Gc -5'
13001 5' -56.7 NC_003387.1 + 51432 0.66 0.620813
Target:  5'- cGCCUcGAACuGCGCcgGUcgAACgCCGCGCa -3'
miRNA:   3'- -CGGGuUUUGuCGCG--CG--UUG-GGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 11022 0.66 0.620813
Target:  5'- cGCCUucguCGGCGcCGCGACgCCGgGuCGg -3'
miRNA:   3'- -CGGGuuuuGUCGC-GCGUUG-GGCgC-GC- -5'
13001 5' -56.7 NC_003387.1 + 43143 0.66 0.620813
Target:  5'- cGCUCAAggucgGACAgGUGCGCGugCUG-GCGa -3'
miRNA:   3'- -CGGGUU-----UUGU-CGCGCGUugGGCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 38214 0.66 0.619719
Target:  5'- uGCCCGucgggucgaucGACAGCGCGCccuuaguGGCCuCGC-CGa -3'
miRNA:   3'- -CGGGUu----------UUGUCGCGCG-------UUGG-GCGcGC- -5'
13001 5' -56.7 NC_003387.1 + 42188 0.66 0.617532
Target:  5'- cGCCUcaacGAGGCgGGCGUGCGcgagcaggacggcgACCgGCGCa -3'
miRNA:   3'- -CGGG----UUUUG-UCGCGCGU--------------UGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 40520 0.66 0.616439
Target:  5'- gGCCCGgcaccGAGCAGCgaccugcccgaggGCGUGACCCccgaggcguucgagGCGCu -3'
miRNA:   3'- -CGGGU-----UUUGUCG-------------CGCGUUGGG--------------CGCGc -5'
13001 5' -56.7 NC_003387.1 + 12735 0.66 0.614253
Target:  5'- uGCCgucgUAGAACugcggguaaucgucGUGCGCGACCuCGCGCu -3'
miRNA:   3'- -CGG----GUUUUGu-------------CGCGCGUUGG-GCGCGc -5'
13001 5' -56.7 NC_003387.1 + 49671 0.66 0.614253
Target:  5'- -gUCGGAGCggucgagcagugcugAGCGUGCAGCCCG-GCa -3'
miRNA:   3'- cgGGUUUUG---------------UCGCGCGUUGGGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 52228 0.66 0.609883
Target:  5'- cGCCac--GCGGgCGCGCAucgcgacgagcaGCUCGCGCc -3'
miRNA:   3'- -CGGguuuUGUC-GCGCGU------------UGGGCGCGc -5'
13001 5' -56.7 NC_003387.1 + 43832 0.66 0.609883
Target:  5'- cGCCgAAAAUGGCgGCGUucACCuCGgGCGa -3'
miRNA:   3'- -CGGgUUUUGUCG-CGCGu-UGG-GCgCGC- -5'
13001 5' -56.7 NC_003387.1 + 44480 0.66 0.609883
Target:  5'- gGCCCcgcacAGCAGCGCGUgcagcaGAUCgGCGUu -3'
miRNA:   3'- -CGGGuu---UUGUCGCGCG------UUGGgCGCGc -5'
13001 5' -56.7 NC_003387.1 + 13941 0.66 0.608791
Target:  5'- cGCCgAGGcuguACAGCGUGUGAuugccgcCCCGCGgGc -3'
miRNA:   3'- -CGGgUUU----UGUCGCGCGUU-------GGGCGCgC- -5'
13001 5' -56.7 NC_003387.1 + 27832 0.66 0.604424
Target:  5'- cGCCCGucggucgaguucGACAGC-CGCGgcgccacgaucgacACCgGCGCGg -3'
miRNA:   3'- -CGGGUu-----------UUGUCGcGCGU--------------UGGgCGCGC- -5'
13001 5' -56.7 NC_003387.1 + 41272 0.66 0.598972
Target:  5'- cGCCCc-GGCGGCGagcuGCAGCgCGgGCa -3'
miRNA:   3'- -CGGGuuUUGUCGCg---CGUUGgGCgCGc -5'
13001 5' -56.7 NC_003387.1 + 4905 0.66 0.598972
Target:  5'- uGCCgGGuGCGGUaGCuGCAcuGCCCGgCGCGg -3'
miRNA:   3'- -CGGgUUuUGUCG-CG-CGU--UGGGC-GCGC- -5'
13001 5' -56.7 NC_003387.1 + 39684 0.66 0.598972
Target:  5'- aGCCUugu-CGGCguuGCGCAGCgaCGUGCGg -3'
miRNA:   3'- -CGGGuuuuGUCG---CGCGUUGg-GCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.