miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13002 3' -56.9 NC_003387.1 + 39219 0.67 0.55077
Target:  5'- -aGCGACUccaccggcgaACCCGCCgGGgCUgucGGUGGUg -3'
miRNA:   3'- ugUGUUGA----------UGGGCGGgCU-GA---CCACCG- -5'
13002 3' -56.9 NC_003387.1 + 43546 0.67 0.540133
Target:  5'- -gGCAACcACCaGCCCGaugugaagGCUGGcGGCa -3'
miRNA:   3'- ugUGUUGaUGGgCGGGC--------UGACCaCCG- -5'
13002 3' -56.9 NC_003387.1 + 36619 0.67 0.540133
Target:  5'- uCGCGGCUGCUggccgccgcgaUGCCCGACggcgcccccGaGUGGCa -3'
miRNA:   3'- uGUGUUGAUGG-----------GCGGGCUGa--------C-CACCG- -5'
13002 3' -56.9 NC_003387.1 + 10250 0.67 0.540133
Target:  5'- cCACGGCgggaUCGCCCGGUUGGUcgcGGCg -3'
miRNA:   3'- uGUGUUGaug-GGCGGGCUGACCA---CCG- -5'
13002 3' -56.9 NC_003387.1 + 11887 0.67 0.529567
Target:  5'- gGCACAACgucAUCgaGCCgGugUGGgagGGCa -3'
miRNA:   3'- -UGUGUUGa--UGGg-CGGgCugACCa--CCG- -5'
13002 3' -56.9 NC_003387.1 + 38884 0.68 0.519078
Target:  5'- ---gAGCc-CCCGCUCGgcaaggGCUGGUGGCg -3'
miRNA:   3'- ugugUUGauGGGCGGGC------UGACCACCG- -5'
13002 3' -56.9 NC_003387.1 + 17085 0.68 0.519078
Target:  5'- -gGCcAgUGCCCGCCCGGCcgccucGGcgGGCu -3'
miRNA:   3'- ugUGuUgAUGGGCGGGCUGa-----CCa-CCG- -5'
13002 3' -56.9 NC_003387.1 + 22291 0.68 0.498355
Target:  5'- gGCGcCAACaaACCCGgcaagCCGcCUGGUGGCg -3'
miRNA:   3'- -UGU-GUUGa-UGGGCg----GGCuGACCACCG- -5'
13002 3' -56.9 NC_003387.1 + 15351 0.68 0.498355
Target:  5'- aGCGgGGCgcCgCCGCCCGACaGGUGccGCa -3'
miRNA:   3'- -UGUgUUGauG-GGCGGGCUGaCCAC--CG- -5'
13002 3' -56.9 NC_003387.1 + 19121 0.68 0.488132
Target:  5'- cGCGCAGuCgaucaucgACCCGaCCgGGC-GGUGGCu -3'
miRNA:   3'- -UGUGUU-Ga-------UGGGC-GGgCUGaCCACCG- -5'
13002 3' -56.9 NC_003387.1 + 13883 0.68 0.488132
Target:  5'- aACGCAAUg--CCGCCgggcagguuCGACgucgGGUGGCg -3'
miRNA:   3'- -UGUGUUGaugGGCGG---------GCUGa---CCACCG- -5'
13002 3' -56.9 NC_003387.1 + 14662 0.68 0.479016
Target:  5'- gACGCGGCgcucgcucagccaCCGCCCGAUcGG-GGCg -3'
miRNA:   3'- -UGUGUUGaug----------GGCGGGCUGaCCaCCG- -5'
13002 3' -56.9 NC_003387.1 + 45672 0.68 0.478009
Target:  5'- cCGCAGC-GCCCGCuuGACguccUGGCu -3'
miRNA:   3'- uGUGUUGaUGGGCGggCUGacc-ACCG- -5'
13002 3' -56.9 NC_003387.1 + 28750 0.68 0.46799
Target:  5'- uGCACAACcAgCCGCCCGGCgc-UGcGCa -3'
miRNA:   3'- -UGUGUUGaUgGGCGGGCUGaccAC-CG- -5'
13002 3' -56.9 NC_003387.1 + 34445 0.69 0.458081
Target:  5'- aACGCAGCcggGCCUGCCgaaguggaucguCGACaUGGcGGCg -3'
miRNA:   3'- -UGUGUUGa--UGGGCGG------------GCUG-ACCaCCG- -5'
13002 3' -56.9 NC_003387.1 + 8041 0.69 0.458081
Target:  5'- cGCGCGAgcCUAUCUGCUCGacgaGCUGGcGGCc -3'
miRNA:   3'- -UGUGUU--GAUGGGCGGGC----UGACCaCCG- -5'
13002 3' -56.9 NC_003387.1 + 14927 0.69 0.448284
Target:  5'- uGCGCGGCUACCgGCgcagCGGCgcauccccGGUGGUa -3'
miRNA:   3'- -UGUGUUGAUGGgCGg---GCUGa-------CCACCG- -5'
13002 3' -56.9 NC_003387.1 + 44904 0.69 0.448284
Target:  5'- gGCGC-GCUAUCCguaucgcgucGCCgGGCUGG-GGCg -3'
miRNA:   3'- -UGUGuUGAUGGG----------CGGgCUGACCaCCG- -5'
13002 3' -56.9 NC_003387.1 + 17153 0.69 0.438605
Target:  5'- cAC-CGGCgGCCCGCgCUGAgCUGGUGcGCc -3'
miRNA:   3'- -UGuGUUGaUGGGCG-GGCU-GACCAC-CG- -5'
13002 3' -56.9 NC_003387.1 + 48181 0.69 0.438605
Target:  5'- gGCGCAggcccgcaaGgUGCCCGCaCCGGC-GGcGGCg -3'
miRNA:   3'- -UGUGU---------UgAUGGGCG-GGCUGaCCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.