miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13003 3' -56.8 NC_003387.1 + 19443 0.67 0.583029
Target:  5'- gGCG-UUAAGGCCgUGCGgGCgCgUGUCa -3'
miRNA:   3'- -CGCuAGUUCCGGgACGCaUG-GgACGG- -5'
13003 3' -56.8 NC_003387.1 + 5702 0.67 0.583029
Target:  5'- gGCGGUCAAGG----GCGUGCCCgcGUCg -3'
miRNA:   3'- -CGCUAGUUCCgggaCGCAUGGGa-CGG- -5'
13003 3' -56.8 NC_003387.1 + 3622 0.67 0.576541
Target:  5'- uGCGcGUCGAGGUgcucgacuucguacgCCUGCGcgccgcgAgCCUGCCc -3'
miRNA:   3'- -CGC-UAGUUCCG---------------GGACGCa------UgGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 27199 0.67 0.572225
Target:  5'- cGCGAgcgCAAccGGCgcaagUCUGCGgucgACCCgGCCg -3'
miRNA:   3'- -CGCUa--GUU--CCG-----GGACGCa---UGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 4013 0.67 0.572225
Target:  5'- gGCGAUCAgccAGGCCCaaaagaaccGCGUGgCg-GCCu -3'
miRNA:   3'- -CGCUAGU---UCCGGGa--------CGCAUgGgaCGG- -5'
13003 3' -56.8 NC_003387.1 + 18475 0.67 0.572225
Target:  5'- gGCGAUCAGccGGUCgaGCGc-CCCgaggGCCu -3'
miRNA:   3'- -CGCUAGUU--CCGGgaCGCauGGGa---CGG- -5'
13003 3' -56.8 NC_003387.1 + 33411 0.67 0.572225
Target:  5'- aCGcgCGAGGCCgUUGUGcgGCUgUGCCu -3'
miRNA:   3'- cGCuaGUUCCGG-GACGCa-UGGgACGG- -5'
13003 3' -56.8 NC_003387.1 + 44657 0.67 0.572225
Target:  5'- gGCGAUCcuGGCCgaggggCUGCcgGUGCUC-GCCa -3'
miRNA:   3'- -CGCUAGuuCCGG------GACG--CAUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 48270 0.67 0.571147
Target:  5'- gGCGGUCGGcucGGCCUUcggcgcgggcucgGCGaacGCCUUGCCc -3'
miRNA:   3'- -CGCUAGUU---CCGGGA-------------CGCa--UGGGACGG- -5'
13003 3' -56.8 NC_003387.1 + 19066 0.67 0.56147
Target:  5'- cGCcgcCAGGGCCacgGUGaUGCCCUGCa -3'
miRNA:   3'- -CGcuaGUUCCGGga-CGC-AUGGGACGg -5'
13003 3' -56.8 NC_003387.1 + 25154 0.67 0.56147
Target:  5'- cCGAUCGGGGCUCgugucaGCG-GCCCgagGCg -3'
miRNA:   3'- cGCUAGUUCCGGGa-----CGCaUGGGa--CGg -5'
13003 3' -56.8 NC_003387.1 + 49676 0.67 0.55077
Target:  5'- aGCGGUCGAGcaguGCUgaGCGUgcaGCCCggcaugaacgUGCCg -3'
miRNA:   3'- -CGCUAGUUC----CGGgaCGCA---UGGG----------ACGG- -5'
13003 3' -56.8 NC_003387.1 + 3405 0.67 0.539074
Target:  5'- cGCGAUCAugcucgGGGCCgUgcccucgGCGUGCUCgGCg -3'
miRNA:   3'- -CGCUAGU------UCCGGgA-------CGCAUGGGaCGg -5'
13003 3' -56.8 NC_003387.1 + 7035 0.67 0.529568
Target:  5'- cGCGuUCAacggcAGGCCCggccGCucGCCCUGaCCg -3'
miRNA:   3'- -CGCuAGU-----UCCGGGa---CGcaUGGGAC-GG- -5'
13003 3' -56.8 NC_003387.1 + 7760 0.67 0.529568
Target:  5'- gGCGAUCGcGGCCUgagccGCGgcCUgaGCCu -3'
miRNA:   3'- -CGCUAGUuCCGGGa----CGCauGGgaCGG- -5'
13003 3' -56.8 NC_003387.1 + 40144 0.68 0.498355
Target:  5'- gGUGAUCGGGGUaagcguCCUGCGaccGCCa-GCCg -3'
miRNA:   3'- -CGCUAGUUCCG------GGACGCa--UGGgaCGG- -5'
13003 3' -56.8 NC_003387.1 + 32505 0.68 0.488132
Target:  5'- uGCGA-CGAcuGCCgCUGCGUgcacGCCCgGCCg -3'
miRNA:   3'- -CGCUaGUUc-CGG-GACGCA----UGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 15183 0.68 0.488132
Target:  5'- gGUGAUCGacgaggAGGCCC-GC--GCCCgGCCg -3'
miRNA:   3'- -CGCUAGU------UCCGGGaCGcaUGGGaCGG- -5'
13003 3' -56.8 NC_003387.1 + 6958 0.68 0.488132
Target:  5'- gGCGggCAGGcGCCaCaGCGcGCCCUcgGCCa -3'
miRNA:   3'- -CGCuaGUUC-CGG-GaCGCaUGGGA--CGG- -5'
13003 3' -56.8 NC_003387.1 + 29801 0.68 0.488132
Target:  5'- cCGAUCGAGGaCUaGCGUcACCCgcccgGCCc -3'
miRNA:   3'- cGCUAGUUCCgGGaCGCA-UGGGa----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.