Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13003 | 5' | -55.8 | NC_003387.1 | + | 1499 | 0.66 | 0.683311 |
Target: 5'- cGAGCACcaggccgcggccgaCGUGCAGGCUCagcacCUCGg -3' miRNA: 3'- cCUCGUGua------------GCACGUCCGGGau---GAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 2414 | 0.71 | 0.373335 |
Target: 5'- cGGGGCGCAUCGcGUugacGGCCCagccguuCUCGa -3' miRNA: 3'- -CCUCGUGUAGCaCGu---CCGGGau-----GAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 3160 | 0.67 | 0.587857 |
Target: 5'- cGGGCGCAccUCG-GCgAGGCcguaaucggggugagCCUGCUCGg -3' miRNA: 3'- cCUCGUGU--AGCaCG-UCCG---------------GGAUGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 3622 | 0.66 | 0.682222 |
Target: 5'- cGAGCugAgcgggCGUGCGGGUaucgccgucgaCCgGCUCGu -3' miRNA: 3'- cCUCGugUa----GCACGUCCG-----------GGaUGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 4496 | 0.7 | 0.418842 |
Target: 5'- cGGGCGCGacacgaUCGUGCGGGUCac-CUCGg -3' miRNA: 3'- cCUCGUGU------AGCACGUCCGGgauGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 5292 | 0.66 | 0.649366 |
Target: 5'- uGGGU--GUUGUGCaugAGGCCCUcCUCGg -3' miRNA: 3'- cCUCGugUAGCACG---UCCGGGAuGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 6089 | 0.68 | 0.539186 |
Target: 5'- cGGGGCGuCGUCG-GCAGGCucgaacaCCUGCg-- -3' miRNA: 3'- -CCUCGU-GUAGCaCGUCCG-------GGAUGagc -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 7769 | 0.67 | 0.642769 |
Target: 5'- cGGAGCACcgcaagAUCcgcaagcugcccgagGUGCAGGCCgaGCUg- -3' miRNA: 3'- -CCUCGUG------UAG---------------CACGUCCGGgaUGAgc -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 10512 | 0.66 | 0.693093 |
Target: 5'- cGGGGCGC-UCGgcucggcgaUGCGGGCCggGUUCGg -3' miRNA: 3'- -CCUCGUGuAGC---------ACGUCCGGgaUGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 11597 | 0.66 | 0.66802 |
Target: 5'- cGGcGCGCugccacuugauccgGUCGUGCAGcGCCagcaGCUCGc -3' miRNA: 3'- -CCuCGUG--------------UAGCACGUC-CGGga--UGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 12185 | 0.74 | 0.251435 |
Target: 5'- gGGGGuCACGcccUCGgGCAGGUCgCUGCUCGg -3' miRNA: 3'- -CCUC-GUGU---AGCaCGUCCGG-GAUGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 13155 | 0.7 | 0.409472 |
Target: 5'- cGAGCACcgCGUGCagaAGGCCgaGCgCGa -3' miRNA: 3'- cCUCGUGuaGCACG---UCCGGgaUGaGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 13436 | 0.68 | 0.5726 |
Target: 5'- gGGGGCuugcCGUCGUcgaGCAGcuuGCCCaGCUCGc -3' miRNA: 3'- -CCUCGu---GUAGCA---CGUC---CGGGaUGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 19401 | 0.69 | 0.477652 |
Target: 5'- uGuGCAgCGUCGUGCGGGCCUUGa--- -3' miRNA: 3'- cCuCGU-GUAGCACGUCCGGGAUgagc -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 23980 | 0.66 | 0.682222 |
Target: 5'- gGGcGGCugGUUGUGCAccgCCUGCUCGc -3' miRNA: 3'- -CC-UCGugUAGCACGUccgGGAUGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 26674 | 0.67 | 0.59442 |
Target: 5'- cGGGUGCugcguuUCGUGCAGcucGCgCUGCUCGu -3' miRNA: 3'- cCUCGUGu-----AGCACGUC---CGgGAUGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 30719 | 0.66 | 0.649366 |
Target: 5'- cGGGGCGCucagcCGgGCAGGugaCCCgGCUCGu -3' miRNA: 3'- -CCUCGUGua---GCaCGUCC---GGGaUGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 34228 | 0.72 | 0.347689 |
Target: 5'- aGAGCAUG-C-UGCAGGCCCUcggggcGCUCGa -3' miRNA: 3'- cCUCGUGUaGcACGUCCGGGA------UGAGC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 35688 | 0.68 | 0.519034 |
Target: 5'- cGGGCACGU-GUGgGGGCCgUACggCGa -3' miRNA: 3'- cCUCGUGUAgCACgUCCGGgAUGa-GC- -5' |
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13003 | 5' | -55.8 | NC_003387.1 | + | 36232 | 0.68 | 0.538118 |
Target: 5'- cGAGCugAcCGUGUAcgccgacccgcuGCCCUGCUCGa -3' miRNA: 3'- cCUCGugUaGCACGUc-----------CGGGAUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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