miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13004 3' -57.6 NC_003387.1 + 18734 0.66 0.584955
Target:  5'- -cGUCGAGCAG--CGGGCAGcGcAUGCa -3'
miRNA:   3'- gaCAGCUCGUCcaGCUCGUC-C-UGCGa -5'
13004 3' -57.6 NC_003387.1 + 9802 0.66 0.584955
Target:  5'- uUGUCGAGCGaccGG-CGcuGCAGGcuGCGCa -3'
miRNA:   3'- gACAGCUCGU---CCaGCu-CGUCC--UGCGa -5'
13004 3' -57.6 NC_003387.1 + 10437 0.66 0.584955
Target:  5'- gCUGUCG-GCGGGcaUCGA-CAGcGCGCUg -3'
miRNA:   3'- -GACAGCuCGUCC--AGCUcGUCcUGCGA- -5'
13004 3' -57.6 NC_003387.1 + 607 0.66 0.574151
Target:  5'- uUGaCGcuCAGGcCGAGCAGGGCGa- -3'
miRNA:   3'- gACaGCucGUCCaGCUCGUCCUGCga -5'
13004 3' -57.6 NC_003387.1 + 9346 0.66 0.563394
Target:  5'- -cGUCGAGCaccAGGacgucgaCGAGCcGGugGCg -3'
miRNA:   3'- gaCAGCUCG---UCCa------GCUCGuCCugCGa -5'
13004 3' -57.6 NC_003387.1 + 13455 0.66 0.563394
Target:  5'- gCUGUCGGGCaAGGgccgcgacggCGAGgAGGGCa-- -3'
miRNA:   3'- -GACAGCUCG-UCCa---------GCUCgUCCUGcga -5'
13004 3' -57.6 NC_003387.1 + 44633 0.66 0.563394
Target:  5'- --cUCGGGCGGGUUGgcgccgaccggcAGCGGGuuaGCGCg -3'
miRNA:   3'- gacAGCUCGUCCAGC------------UCGUCC---UGCGa -5'
13004 3' -57.6 NC_003387.1 + 48227 0.66 0.552691
Target:  5'- -gGUCGAGCGGGgccuccgCGGGCucGGccuuCGCg -3'
miRNA:   3'- gaCAGCUCGUCCa------GCUCGu-CCu---GCGa -5'
13004 3' -57.6 NC_003387.1 + 20972 0.66 0.552691
Target:  5'- -cGgCGAcCAGGUCGAGCAGGGacaccccuaacuCGCc -3'
miRNA:   3'- gaCaGCUcGUCCAGCUCGUCCU------------GCGa -5'
13004 3' -57.6 NC_003387.1 + 26939 0.66 0.54205
Target:  5'- -cGcCGAGCGGccgagaauGUCGAGCGGGuuGCc -3'
miRNA:   3'- gaCaGCUCGUC--------CAGCUCGUCCugCGa -5'
13004 3' -57.6 NC_003387.1 + 42195 0.67 0.531478
Target:  5'- ---aCGAgGCGGGcgugcgCGAGCAGGACGg- -3'
miRNA:   3'- gacaGCU-CGUCCa-----GCUCGUCCUGCga -5'
13004 3' -57.6 NC_003387.1 + 39218 0.67 0.531478
Target:  5'- -gGUCGGGCAGuGg-GAGCGGGuaccgGCGCc -3'
miRNA:   3'- gaCAGCUCGUC-CagCUCGUCC-----UGCGa -5'
13004 3' -57.6 NC_003387.1 + 33944 0.67 0.529373
Target:  5'- -gGUCGAGCuucggcagcuugccgGGGUCGgguaugagcugccgcAGCGGGuCGCg -3'
miRNA:   3'- gaCAGCUCG---------------UCCAGC---------------UCGUCCuGCGa -5'
13004 3' -57.6 NC_003387.1 + 24570 0.67 0.520982
Target:  5'- -aGcCGAGCuGGcCGGGCucgaucguGGGGCGCUu -3'
miRNA:   3'- gaCaGCUCGuCCaGCUCG--------UCCUGCGA- -5'
13004 3' -57.6 NC_003387.1 + 49670 0.67 0.500241
Target:  5'- -cGUCgGAGC-GGUCGAGCAG--UGCUg -3'
miRNA:   3'- gaCAG-CUCGuCCAGCUCGUCcuGCGA- -5'
13004 3' -57.6 NC_003387.1 + 35137 0.67 0.490007
Target:  5'- -cGgCGGccacuGCAGGUCGAccaGCGGGGCGUUg -3'
miRNA:   3'- gaCaGCU-----CGUCCAGCU---CGUCCUGCGA- -5'
13004 3' -57.6 NC_003387.1 + 28227 0.67 0.490007
Target:  5'- gCUGaCGAaccGCcGGUCGGcCAGGACGCg -3'
miRNA:   3'- -GACaGCU---CGuCCAGCUcGUCCUGCGa -5'
13004 3' -57.6 NC_003387.1 + 44602 0.67 0.490007
Target:  5'- -aGUCGAGCGacgccGUCGGGCcGuGGCGCg -3'
miRNA:   3'- gaCAGCUCGUc----CAGCUCGuC-CUGCGa -5'
13004 3' -57.6 NC_003387.1 + 15619 0.67 0.479873
Target:  5'- -cGUCGAGCAcGUCGA---GGGCGCg -3'
miRNA:   3'- gaCAGCUCGUcCAGCUcguCCUGCGa -5'
13004 3' -57.6 NC_003387.1 + 16467 0.68 0.469841
Target:  5'- --cUUGAGCAuuUCGAGCAGGGCaGCg -3'
miRNA:   3'- gacAGCUCGUccAGCUCGUCCUG-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.