miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13005 3' -56.8 NC_003387.1 + 15828 0.66 0.683789
Target:  5'- cCGGuUGUGACGcCGAcgCGGUgcCCGUCGg -3'
miRNA:   3'- -GUC-GCGCUGC-GCUa-GCCAa-GGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 15939 0.69 0.477167
Target:  5'- uGGCGUG-CGCG-UCGGccagcgccgagugCCGUCGCu -3'
miRNA:   3'- gUCGCGCuGCGCuAGCCaa-----------GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 17189 0.66 0.640869
Target:  5'- gCGGCGaCGGCGCGAaagUGGccgaggCCGagGCa -3'
miRNA:   3'- -GUCGC-GCUGCGCUa--GCCaa----GGCagCG- -5'
13005 3' -56.8 NC_003387.1 + 17434 0.67 0.57643
Target:  5'- uCAGUGCGGCGaaCGAUaGGcgCCaGUCGUa -3'
miRNA:   3'- -GUCGCGCUGC--GCUAgCCaaGG-CAGCG- -5'
13005 3' -56.8 NC_003387.1 + 18936 0.66 0.629018
Target:  5'- gCAGCuucucGCGACGguCGGcaagaucUCGGUUUCGUCGg -3'
miRNA:   3'- -GUCG-----CGCUGC--GCU-------AGCCAAGGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 20214 0.67 0.57643
Target:  5'- gGGCGUGcACGCag-CGGcagUCGUCGCa -3'
miRNA:   3'- gUCGCGC-UGCGcuaGCCaa-GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 20474 0.73 0.30009
Target:  5'- uCGGCGaCGGCcagGCGGUCGGccagCuCGUCGCg -3'
miRNA:   3'- -GUCGC-GCUG---CGCUAGCCaa--G-GCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 20514 0.7 0.406747
Target:  5'- gCAGCGCGGCGuCGcgcucGUCGGUgaCGaCGCg -3'
miRNA:   3'- -GUCGCGCUGC-GC-----UAGCCAagGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 20897 0.66 0.68379
Target:  5'- gCGGCGUcauuggagGAUGCGAUCGGcggcgacCCGuUCGUc -3'
miRNA:   3'- -GUCGCG--------CUGCGCUAGCCaa-----GGC-AGCG- -5'
13005 3' -56.8 NC_003387.1 + 21628 0.69 0.503317
Target:  5'- gGGUGCGuCGUGAUCGGaUUCaaaacaGcCGCa -3'
miRNA:   3'- gUCGCGCuGCGCUAGCC-AAGg-----CaGCG- -5'
13005 3' -56.8 NC_003387.1 + 22171 0.68 0.534234
Target:  5'- cCGGcCGCGGCgGCGGuccaugUCGGggcgcCCGUUGCa -3'
miRNA:   3'- -GUC-GCGCUG-CGCU------AGCCaa---GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 22365 0.67 0.576431
Target:  5'- aGGCGCacccGGCGCagugUGGUUCCG-CGCc -3'
miRNA:   3'- gUCGCG----CUGCGcua-GCCAAGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 25171 0.69 0.503317
Target:  5'- uCGGCuCGGCGCGGUggcccCGGcgCCGcCGCc -3'
miRNA:   3'- -GUCGcGCUGCGCUA-----GCCaaGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 25298 0.66 0.662383
Target:  5'- cCAGgGCGACGuCGGcgCGGUggugccagcgCgCGUCGUa -3'
miRNA:   3'- -GUCgCGCUGC-GCUa-GCCAa---------G-GCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 25930 0.66 0.630096
Target:  5'- cCAGCGCGGCcucgucgaGCGGUgcUGGcgCUGcUCGCu -3'
miRNA:   3'- -GUCGCGCUG--------CGCUA--GCCaaGGC-AGCG- -5'
13005 3' -56.8 NC_003387.1 + 26084 0.69 0.448817
Target:  5'- cCGGCGUGAcguauuuccagcaCGCGAUCgacuaccugcgccaGGUcggcgcgUCCGUCGCc -3'
miRNA:   3'- -GUCGCGCU-------------GCGCUAG--------------CCA-------AGGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 27501 0.67 0.565797
Target:  5'- gCGGCuGUGGCGCGAagaucCGGccgCCGcCGCg -3'
miRNA:   3'- -GUCG-CGCUGCGCUa----GCCaa-GGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 27851 0.67 0.608563
Target:  5'- aCAGcCGCGGCGCcacGAUCGacaCCGgCGCg -3'
miRNA:   3'- -GUC-GCGCUGCG---CUAGCcaaGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 27935 0.72 0.307473
Target:  5'- uCGGcCGCGACcCGAgCGGUUCCGgcUCGUg -3'
miRNA:   3'- -GUC-GCGCUGcGCUaGCCAAGGC--AGCG- -5'
13005 3' -56.8 NC_003387.1 + 27956 0.67 0.606413
Target:  5'- gGGCGCucGGCGUGcUCGGcuuggccggugCCGUUGCg -3'
miRNA:   3'- gUCGCG--CUGCGCuAGCCaa---------GGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.