miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13005 3' -56.8 NC_003387.1 + 7811 0.66 0.630095
Target:  5'- cCAGCccgGCGACGCGAUaCGGauaUG-CGCg -3'
miRNA:   3'- -GUCG---CGCUGCGCUA-GCCaagGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 44491 0.66 0.630095
Target:  5'- gCAGCGCGugcaGCaGAUCGG---CGUUGCg -3'
miRNA:   3'- -GUCGCGCug--CG-CUAGCCaagGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 18936 0.66 0.629018
Target:  5'- gCAGCuucucGCGACGguCGGcaagaucUCGGUUUCGUCGg -3'
miRNA:   3'- -GUCG-----CGCUGC--GCU-------AGCCAAGGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 3600 0.67 0.619324
Target:  5'- aGGCGCGACGgGugacagCGGgugCgCGUCGa -3'
miRNA:   3'- gUCGCGCUGCgCua----GCCaa-G-GCAGCg -5'
13005 3' -56.8 NC_003387.1 + 2838 0.67 0.619324
Target:  5'- aCGGcCGCGACGcCGAcgacaugaucgUCGGUgagGUCGCc -3'
miRNA:   3'- -GUC-GCGCUGC-GCU-----------AGCCAaggCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 27851 0.67 0.608563
Target:  5'- aCAGcCGCGGCGCcacGAUCGacaCCGgCGCg -3'
miRNA:   3'- -GUC-GCGCUGCG---CUAGCcaaGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 27956 0.67 0.606413
Target:  5'- gGGCGCucGGCGUGcUCGGcuuggccggugCCGUUGCg -3'
miRNA:   3'- gUCGCG--CUGCGCuAGCCaa---------GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 14452 0.67 0.597821
Target:  5'- -cGCGC-ACGC-AUgGGUUCCGUUGg -3'
miRNA:   3'- guCGCGcUGCGcUAgCCAAGGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 40904 0.67 0.597821
Target:  5'- aGGcCGCGAuCGCGGUCGGg-CgGUgGCc -3'
miRNA:   3'- gUC-GCGCU-GCGCUAGCCaaGgCAgCG- -5'
13005 3' -56.8 NC_003387.1 + 4497 0.67 0.594604
Target:  5'- gGGCGCGACaCGAucgugcgggucaccUCGGccgCCGcCGCc -3'
miRNA:   3'- gUCGCGCUGcGCU--------------AGCCaa-GGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 29804 0.67 0.587108
Target:  5'- cCGGCGCcGCuaauuuCGGUCGcGUuggCCGUCGCg -3'
miRNA:   3'- -GUCGCGcUGc-----GCUAGC-CAa--GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 44841 0.67 0.587108
Target:  5'- gAGUGCGGcCGaccucaaGGUCGGUgccguagCCGUCGg -3'
miRNA:   3'- gUCGCGCU-GCg------CUAGCCAa------GGCAGCg -5'
13005 3' -56.8 NC_003387.1 + 32235 0.67 0.586039
Target:  5'- gAGCGCGACGagcuggcCGAcCGccuggCCGUCGCc -3'
miRNA:   3'- gUCGCGCUGC-------GCUaGCcaa--GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 22365 0.67 0.576431
Target:  5'- aGGCGCacccGGCGCagugUGGUUCCG-CGCc -3'
miRNA:   3'- gUCGCG----CUGCGcua-GCCAAGGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 43114 0.67 0.576431
Target:  5'- gAGCGCGACG-GcgCGGcgCCG-CGg -3'
miRNA:   3'- gUCGCGCUGCgCuaGCCaaGGCaGCg -5'
13005 3' -56.8 NC_003387.1 + 20214 0.67 0.57643
Target:  5'- gGGCGUGcACGCag-CGGcagUCGUCGCa -3'
miRNA:   3'- gUCGCGC-UGCGcuaGCCaa-GGCAGCG- -5'
13005 3' -56.8 NC_003387.1 + 17434 0.67 0.57643
Target:  5'- uCAGUGCGGCGaaCGAUaGGcgCCaGUCGUa -3'
miRNA:   3'- -GUCGCGCUGC--GCUAgCCaaGG-CAGCG- -5'
13005 3' -56.8 NC_003387.1 + 41289 0.67 0.575365
Target:  5'- gCAGCGCGGgcacgagcacCGaCGAcagcaccUCGGggCCGaUCGCg -3'
miRNA:   3'- -GUCGCGCU----------GC-GCU-------AGCCaaGGC-AGCG- -5'
13005 3' -56.8 NC_003387.1 + 27501 0.67 0.565797
Target:  5'- gCGGCuGUGGCGCGAagaucCGGccgCCGcCGCg -3'
miRNA:   3'- -GUCG-CGCUGCGCUa----GCCaa-GGCaGCG- -5'
13005 3' -56.8 NC_003387.1 + 41079 0.67 0.565797
Target:  5'- uCAGCGCGACGUugaauagccacuGcgCGG--CgGUCGCg -3'
miRNA:   3'- -GUCGCGCUGCG------------CuaGCCaaGgCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.