Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13005 | 5' | -54.4 | NC_003387.1 | + | 6419 | 0.7 | 0.50842 |
Target: 5'- gCCGCGgugacuGCGGGCCAGGCcGUCGagguCGUg- -3' miRNA: 3'- -GGCGC------UGCUCGGUCUGaCAGU----GCAaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 7462 | 0.72 | 0.399331 |
Target: 5'- aCGCGAUGGGCCAGGCgaUCACc--- -3' miRNA: 3'- gGCGCUGCUCGGUCUGacAGUGcaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 10250 | 0.68 | 0.650357 |
Target: 5'- gCCGCGcCGAGCgCGGGCUcaagGUCGCc--- -3' miRNA: 3'- -GGCGCuGCUCG-GUCUGA----CAGUGcaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 11694 | 0.67 | 0.672461 |
Target: 5'- gCCGCGGucguCGGGCUc-GCUGUCGCGa-- -3' miRNA: 3'- -GGCGCU----GCUCGGucUGACAGUGCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 12988 | 0.66 | 0.768699 |
Target: 5'- aCCGaCGACGAGCUuaAGGC-GUCGuCGg-- -3' miRNA: 3'- -GGC-GCUGCUCGG--UCUGaCAGU-GCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 17028 | 0.66 | 0.726848 |
Target: 5'- aCCGCGGCGGcugccgcccucGCCGGGC-GUCGuCGa-- -3' miRNA: 3'- -GGCGCUGCU-----------CGGUCUGaCAGU-GCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 17176 | 0.71 | 0.464094 |
Target: 5'- aUCGCGgcgucgugcuccugGCGGGCCAGGUUGUCGCGc-- -3' miRNA: 3'- -GGCGC--------------UGCUCGGUCUGACAGUGCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 19340 | 0.68 | 0.660317 |
Target: 5'- gCGCGGCGAgaaccugGCCGGGCggGcUCugGUUg -3' miRNA: 3'- gGCGCUGCU-------CGGUCUGa-C-AGugCAAa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 20117 | 0.67 | 0.683461 |
Target: 5'- cCCGCGGCGAGCCcgagcaGGAUcgacGUCAgGa-- -3' miRNA: 3'- -GGCGCUGCUCGG------UCUGa---CAGUgCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 20474 | 0.66 | 0.758421 |
Target: 5'- uCgGCGACG-GCCAGGCgGUCGg---- -3' miRNA: 3'- -GgCGCUGCuCGGUCUGaCAGUgcaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 21004 | 0.68 | 0.628184 |
Target: 5'- cUCGuCGGCGAcagcGCCGGGCUGUCAa---- -3' miRNA: 3'- -GGC-GCUGCU----CGGUCUGACAGUgcaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 21259 | 0.67 | 0.7053 |
Target: 5'- gCCGCGACGAggaGUCGGGCaagGUgGCGc-- -3' miRNA: 3'- -GGCGCUGCU---CGGUCUGa--CAgUGCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 21479 | 0.71 | 0.437314 |
Target: 5'- cCCGCGccgguCGGGCCGGGCUGguuCGUg- -3' miRNA: 3'- -GGCGCu----GCUCGGUCUGACaguGCAaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 24776 | 0.68 | 0.628184 |
Target: 5'- aUCGCcACGAGCCGGAaccgcucgggGUCGCGg-- -3' miRNA: 3'- -GGCGcUGCUCGGUCUga--------CAGUGCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 25210 | 0.68 | 0.650357 |
Target: 5'- cUCGCGGCGgcGGCCGGAUcuUCGCGc-- -3' miRNA: 3'- -GGCGCUGC--UCGGUCUGacAGUGCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 30182 | 0.7 | 0.487565 |
Target: 5'- aCCGCGuCGAGCCAGcccucggccuggGCcaggGUCGCGg-- -3' miRNA: 3'- -GGCGCuGCUCGGUC------------UGa---CAGUGCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 42111 | 0.69 | 0.572981 |
Target: 5'- aCCGCaagGGUGAGCCGGuGCUcGUCACGUg- -3' miRNA: 3'- -GGCG---CUGCUCGGUC-UGA-CAGUGCAaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 42233 | 0.68 | 0.650357 |
Target: 5'- aCCGCGAUGGGCgAGGUUGUguCGa-- -3' miRNA: 3'- -GGCGCUGCUCGgUCUGACAguGCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 45836 | 0.66 | 0.768699 |
Target: 5'- cCCGCGACGAcGCCgcggAGAucCUG-CGCGa-- -3' miRNA: 3'- -GGCGCUGCU-CGG----UCU--GACaGUGCaaa -5' |
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13005 | 5' | -54.4 | NC_003387.1 | + | 47756 | 0.66 | 0.752191 |
Target: 5'- gCUGCG-CGAGCaCGGccugaccggcugguCUGUCACGUUc -3' miRNA: 3'- -GGCGCuGCUCG-GUCu-------------GACAGUGCAAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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