miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13006 3' -57.7 NC_003387.1 + 22698 0.67 0.445909
Target:  5'- --cGGcGGCGCUGGCGgCCUgGGCGAu -3'
miRNA:   3'- aacCCaCCGUGACUGUgGGAgCUGUU- -5'
13006 3' -57.7 NC_003387.1 + 38601 0.68 0.40731
Target:  5'- aUGGGUGGCAguaauaccacUUGGuCGCCgUCGACc- -3'
miRNA:   3'- aACCCACCGU----------GACU-GUGGgAGCUGuu -5'
13006 3' -57.7 NC_003387.1 + 12033 0.68 0.388811
Target:  5'- -cGGuGUGGCAg-GGCAUCgUCGACAAg -3'
miRNA:   3'- aaCC-CACCGUgaCUGUGGgAGCUGUU- -5'
13006 3' -57.7 NC_003387.1 + 23233 0.68 0.379771
Target:  5'- -cGGcuGUGGUGCUcGGCGCCCUCGgGCAc -3'
miRNA:   3'- aaCC--CACCGUGA-CUGUGGGAGC-UGUu -5'
13006 3' -57.7 NC_003387.1 + 52498 0.7 0.312654
Target:  5'- -cGGG-GGCGCgcaUGucaACCCUCGACGAa -3'
miRNA:   3'- aaCCCaCCGUG---ACug-UGGGAGCUGUU- -5'
13006 3' -57.7 NC_003387.1 + 6523 0.7 0.297345
Target:  5'- -cGGGUgGGCAcCUGACACCCUgcugucgucccUGGCGc -3'
miRNA:   3'- aaCCCA-CCGU-GACUGUGGGA-----------GCUGUu -5'
13006 3' -57.7 NC_003387.1 + 49784 0.7 0.275483
Target:  5'- cUGcGGUGGCuGCUGGCGCagUUCGACGAg -3'
miRNA:   3'- aAC-CCACCG-UGACUGUGg-GAGCUGUU- -5'
13006 3' -57.7 NC_003387.1 + 35646 0.72 0.2176
Target:  5'- -cGGGcgGGCACUGGCcgaCCUCGACc- -3'
miRNA:   3'- aaCCCa-CCGUGACUGug-GGAGCUGuu -5'
13006 3' -57.7 NC_003387.1 + 48091 0.72 0.200752
Target:  5'- -cGGGUGGCGCUGccgcuGCGCCCgcggUGGCu- -3'
miRNA:   3'- aaCCCACCGUGAC-----UGUGGGa---GCUGuu -5'
13006 3' -57.7 NC_003387.1 + 49209 0.75 0.144288
Target:  5'- -cGGG-GGCACUGGCGCCgguucgUUCGACAGc -3'
miRNA:   3'- aaCCCaCCGUGACUGUGG------GAGCUGUU- -5'
13006 3' -57.7 NC_003387.1 + 30973 0.77 0.088927
Target:  5'- --cGGUGGCGCUGACGCCgagcgcCUCGGCGAc -3'
miRNA:   3'- aacCCACCGUGACUGUGG------GAGCUGUU- -5'
13006 3' -57.7 NC_003387.1 + 52462 1.03 0.001086
Target:  5'- cUUGGGUGGCACUGACACCCUCGACAAc -3'
miRNA:   3'- -AACCCACCGUGACUGUGGGAGCUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.