miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13006 5' -54.5 NC_003387.1 + 9854 0.66 0.689803
Target:  5'- cCUCGCCGCcGG-GC-ACCGCGGu-- -3'
miRNA:   3'- cGAGUGGCGuUCaCGuUGGCGCUguu -5'
13006 5' -54.5 NC_003387.1 + 52582 0.66 0.689803
Target:  5'- aGCUCggcggcgcggAUCGCGAGgGCGACCGCaucgaGGCGGg -3'
miRNA:   3'- -CGAG----------UGGCGUUCaCGUUGGCG-----CUGUU- -5'
13006 5' -54.5 NC_003387.1 + 40859 0.66 0.689803
Target:  5'- cGCUCACCGaCAcaauGUGgucggauuuCCGCGGCGAc -3'
miRNA:   3'- -CGAGUGGC-GUu---CACguu------GGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 25991 0.66 0.689803
Target:  5'- cGCUCGCCG-GGGUcGCGauccagcucgcGCCGCGcACGAc -3'
miRNA:   3'- -CGAGUGGCgUUCA-CGU-----------UGGCGC-UGUU- -5'
13006 5' -54.5 NC_003387.1 + 5124 0.66 0.678671
Target:  5'- gGCgagaACCGCAGcGUGCGACC-CGAUc- -3'
miRNA:   3'- -CGag--UGGCGUU-CACGUUGGcGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 14658 0.66 0.678671
Target:  5'- gGCgUUAUCGCGAucGCgAACCGCGGCAc -3'
miRNA:   3'- -CG-AGUGGCGUUcaCG-UUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 39761 0.66 0.677555
Target:  5'- aGCUCGCCGacgcGGUGCGcaagcgcaacgagGCCaGCGGCc- -3'
miRNA:   3'- -CGAGUGGCgu--UCACGU-------------UGG-CGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 8123 0.66 0.675322
Target:  5'- aGCUCguaCGCGcugcugucccggccGGgcaGCGACCGCGACGu -3'
miRNA:   3'- -CGAGug-GCGU--------------UCa--CGUUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 52224 0.67 0.667494
Target:  5'- cGgUCGCCacGCGGGcGCGcAUCGCGACGAg -3'
miRNA:   3'- -CgAGUGG--CGUUCaCGU-UGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 50079 0.67 0.664133
Target:  5'- aGCaCGCCGCGccGGUGCGGCuucgcauccuuuugCGCGACc- -3'
miRNA:   3'- -CGaGUGGCGU--UCACGUUG--------------GCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 12343 0.67 0.656281
Target:  5'- cGCUaACgGCGAGUucaucaccaacGCcGCCGCGACGg -3'
miRNA:   3'- -CGAgUGgCGUUCA-----------CGuUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 36762 0.67 0.656281
Target:  5'- cCUcCACCGCAAGcacaaUGCAGgCGCGAg-- -3'
miRNA:   3'- cGA-GUGGCGUUC-----ACGUUgGCGCUguu -5'
13006 5' -54.5 NC_003387.1 + 25173 0.67 0.645045
Target:  5'- gGCUCGgCGCGGuGgccccgGCGccgccGCCGCGGCAGc -3'
miRNA:   3'- -CGAGUgGCGUU-Ca-----CGU-----UGGCGCUGUU- -5'
13006 5' -54.5 NC_003387.1 + 49067 0.67 0.645045
Target:  5'- cGCUCACCggGCAGGcucGCGGCgCGCaGGCGu -3'
miRNA:   3'- -CGAGUGG--CGUUCa--CGUUG-GCG-CUGUu -5'
13006 5' -54.5 NC_003387.1 + 5570 0.67 0.645045
Target:  5'- gGCUgaCGCCGcCGAGcugGCAAagauCCGCGACGg -3'
miRNA:   3'- -CGA--GUGGC-GUUCa--CGUU----GGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 12339 0.67 0.643921
Target:  5'- aGCUCGCCGCcgacgucGAGgcccuugGCcccGGCCGCGAUc- -3'
miRNA:   3'- -CGAGUGGCG-------UUCa------CG---UUGGCGCUGuu -5'
13006 5' -54.5 NC_003387.1 + 42953 0.67 0.633797
Target:  5'- cGCUCGCC--AAGUGCcGCCcCGGCAu -3'
miRNA:   3'- -CGAGUGGcgUUCACGuUGGcGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 31731 0.67 0.633797
Target:  5'- -gUCGCCGaCGAGaGCuAUCGCGGCAu -3'
miRNA:   3'- cgAGUGGC-GUUCaCGuUGGCGCUGUu -5'
13006 5' -54.5 NC_003387.1 + 1142 0.67 0.633797
Target:  5'- uGCUCGgCGCcugcGUGCAugCGCGGu-- -3'
miRNA:   3'- -CGAGUgGCGuu--CACGUugGCGCUguu -5'
13006 5' -54.5 NC_003387.1 + 25430 0.67 0.633797
Target:  5'- gGCUCucaaggGCCGCcAGUGCGGCguucuccucgCGCGACc- -3'
miRNA:   3'- -CGAG------UGGCGuUCACGUUG----------GCGCUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.