miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 3' -55.4 NC_003387.1 + 48770 0.67 0.620398
Target:  5'- gCGGuGCUCGGCGcagccAGCuCGCCgCUGAUCg -3'
miRNA:   3'- -GCU-CGAGUCGU-----UUGuGCGG-GACUGGa -5'
13007 3' -55.4 NC_003387.1 + 16532 0.67 0.620398
Target:  5'- aGGGCaUUGGaAAACGCGCCCUuACCa -3'
miRNA:   3'- gCUCG-AGUCgUUUGUGCGGGAcUGGa -5'
13007 3' -55.4 NC_003387.1 + 27870 0.67 0.620398
Target:  5'- uCGAGC-CAGCcacCACGCaCCcGGCCg -3'
miRNA:   3'- -GCUCGaGUCGuuuGUGCG-GGaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 44617 0.67 0.609289
Target:  5'- uCGGGC-CGuggcGCGAGCGugugGCCCUGGCCg -3'
miRNA:   3'- -GCUCGaGU----CGUUUGUg---CGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 48084 0.67 0.609289
Target:  5'- cCGGGCcuuguccuuaUCGGCcuuGGC-CGCCUUGGCCg -3'
miRNA:   3'- -GCUCG----------AGUCGu--UUGuGCGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 30072 0.67 0.602633
Target:  5'- aGGGC-CAGCGAGCAUGCgCUcagucgucggcgggcGGCCa -3'
miRNA:   3'- gCUCGaGUCGUUUGUGCGgGA---------------CUGGa -5'
13007 3' -55.4 NC_003387.1 + 18306 0.67 0.5982
Target:  5'- -cGGCcgCGGCGGugGCGCCCggcaacggcgUGGCCg -3'
miRNA:   3'- gcUCGa-GUCGUUugUGCGGG----------ACUGGa -5'
13007 3' -55.4 NC_003387.1 + 30056 0.67 0.58714
Target:  5'- --cGCcCA-CGAGCGCGCCCUGACg- -3'
miRNA:   3'- gcuCGaGUcGUUUGUGCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 52645 0.67 0.58714
Target:  5'- uCGAGC-CAGCAA--ACGCCCgcgGcGCCg -3'
miRNA:   3'- -GCUCGaGUCGUUugUGCGGGa--C-UGGa -5'
13007 3' -55.4 NC_003387.1 + 16209 0.67 0.58714
Target:  5'- gGGGCUCAGCcuGCGCuGCCauaUG-CCg -3'
miRNA:   3'- gCUCGAGUCGuuUGUG-CGGg--ACuGGa -5'
13007 3' -55.4 NC_003387.1 + 4137 0.67 0.584933
Target:  5'- gCGGGCuuuugggUCGGCGAggcgggcgucgauGCACGCCUggcacgUGACCUc -3'
miRNA:   3'- -GCUCG-------AGUCGUU-------------UGUGCGGG------ACUGGA- -5'
13007 3' -55.4 NC_003387.1 + 1727 0.68 0.565145
Target:  5'- gCGuGCaCAGCAAACgaaaACGCCCccGGCCg -3'
miRNA:   3'- -GCuCGaGUCGUUUG----UGCGGGa-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 7048 0.68 0.554226
Target:  5'- -aGGCcCGGCc-GCuCGCCCUGACCg -3'
miRNA:   3'- gcUCGaGUCGuuUGuGCGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 7171 0.68 0.543371
Target:  5'- aCGAGCUggCGGCGGAU-CGCCUUG-CCg -3'
miRNA:   3'- -GCUCGA--GUCGUUUGuGCGGGACuGGa -5'
13007 3' -55.4 NC_003387.1 + 2376 0.68 0.543371
Target:  5'- uGAGCguggUCGGCuaccGCaACGCCCUGGCg- -3'
miRNA:   3'- gCUCG----AGUCGuu--UG-UGCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 7274 0.68 0.532586
Target:  5'- aCGGGUUCGGCGugacguuCACGCCC-GGCg- -3'
miRNA:   3'- -GCUCGAGUCGUuu-----GUGCGGGaCUGga -5'
13007 3' -55.4 NC_003387.1 + 3299 0.68 0.532586
Target:  5'- --uGCUCGGCGAcguucACGCGCCC--ACCUc -3'
miRNA:   3'- gcuCGAGUCGUU-----UGUGCGGGacUGGA- -5'
13007 3' -55.4 NC_003387.1 + 22653 0.68 0.532586
Target:  5'- uGAGCgCAuGCucGCugGCCCUGAUa- -3'
miRNA:   3'- gCUCGaGU-CGuuUGugCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 19324 0.68 0.521878
Target:  5'- cCGAGUaCAGCGAcgaGCGCGgcgagaaCCUGGCCg -3'
miRNA:   3'- -GCUCGaGUCGUU---UGUGCg------GGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 3621 0.69 0.511256
Target:  5'- cCGAGCUgAGCGGGCGugcggguauCGCCgUcGACCg -3'
miRNA:   3'- -GCUCGAgUCGUUUGU---------GCGGgA-CUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.