miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13012 5' -52.7 NC_003390.1 + 32499 0.66 0.767987
Target:  5'- --cCUGCUGCAacCCAGUcacgcggaugUCAUCACGc -3'
miRNA:   3'- ccaGACGACGUc-GGUCA----------AGUAGUGUa -5'
13012 5' -52.7 NC_003390.1 + 44381 0.66 0.746418
Target:  5'- aGG-UUGCUGguGCUGGcUUCGUCaACAUg -3'
miRNA:   3'- -CCaGACGACguCGGUC-AAGUAG-UGUA- -5'
13012 5' -52.7 NC_003390.1 + 38979 0.68 0.633016
Target:  5'- aGGaUCUGCUGCuaguGGCCAGggUUAUCuACGc -3'
miRNA:   3'- -CC-AGACGACG----UCGGUCa-AGUAG-UGUa -5'
13012 5' -52.7 NC_003390.1 + 3503 0.69 0.564108
Target:  5'- uGGUCUGCUuaGCA-CCAGUg-AUCACAc -3'
miRNA:   3'- -CCAGACGA--CGUcGGUCAagUAGUGUa -5'
13012 5' -52.7 NC_003390.1 + 20688 0.73 0.358041
Target:  5'- cGGcCUGCUGCAGCUugaGGgcagUCAUCugGg -3'
miRNA:   3'- -CCaGACGACGUCGG---UCa---AGUAGugUa -5'
13012 5' -52.7 NC_003390.1 + 3908 1.08 0.001374
Target:  5'- cGGUCUGCUGCAGCCAGUUCAUCACAUc -3'
miRNA:   3'- -CCAGACGACGUCGGUCAAGUAGUGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.