miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13015 3' -51.6 NC_003390.1 + 33397 0.66 0.893704
Target:  5'- uCCAu-GGGCuGUUGGGUACcUugGCCu -3'
miRNA:   3'- -GGUucUCCGuUAGCUCGUGcAugCGG- -5'
13015 3' -51.6 NC_003390.1 + 38296 0.66 0.862267
Target:  5'- cCCAGGAGcCGAUgGAGCagACGga-GCCc -3'
miRNA:   3'- -GGUUCUCcGUUAgCUCG--UGCaugCGG- -5'
13015 3' -51.6 NC_003390.1 + 17907 0.67 0.817367
Target:  5'- aCCGAagacGAGGCAGcucUCGuGCGCGaGCaGCUg -3'
miRNA:   3'- -GGUU----CUCCGUU---AGCuCGUGCaUG-CGG- -5'
13015 3' -51.6 NC_003390.1 + 14344 0.68 0.807731
Target:  5'- uCCAuacAGGUuucCGGGCAUGaGCGCCg -3'
miRNA:   3'- -GGUuc-UCCGuuaGCUCGUGCaUGCGG- -5'
13015 3' -51.6 NC_003390.1 + 26950 0.68 0.807731
Target:  5'- aUCAGGAGcUggUCG-GCugGgcCGCCa -3'
miRNA:   3'- -GGUUCUCcGuuAGCuCGugCauGCGG- -5'
13015 3' -51.6 NC_003390.1 + 29481 0.7 0.679267
Target:  5'- aCAGGGGGCcGUgggggauccggagCGGGCGCGggaGCCg -3'
miRNA:   3'- gGUUCUCCGuUA-------------GCUCGUGCaugCGG- -5'
13015 3' -51.6 NC_003390.1 + 6863 0.7 0.66917
Target:  5'- aUCAGGAGGCcGUUGAGCGugcCGguaAUGCUg -3'
miRNA:   3'- -GGUUCUCCGuUAGCUCGU---GCa--UGCGG- -5'
13015 3' -51.6 NC_003390.1 + 32462 0.73 0.481231
Target:  5'- gCAGGaAGGCAAUCGAGgACGcagcugaaGCCg -3'
miRNA:   3'- gGUUC-UCCGUUAGCUCgUGCaug-----CGG- -5'
13015 3' -51.6 NC_003390.1 + 6821 1.16 0.000812
Target:  5'- cCCAAGAGGCAAUCGAGCACGUACGCCa -3'
miRNA:   3'- -GGUUCUCCGUUAGCUCGUGCAUGCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.