miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13017 3' -58.8 NC_003390.1 + 43694 0.66 0.4423
Target:  5'- -cCACCGGGGccugUGgggcCUCAGGAGCgCUu -3'
miRNA:   3'- uaGUGGCCUCa---GCa---GAGUCCUCGgGA- -5'
13017 3' -58.8 NC_003390.1 + 37868 0.7 0.248639
Target:  5'- gAUCGCCcGGGUUGcCUUGGGGGCCUUg -3'
miRNA:   3'- -UAGUGGcCUCAGCaGAGUCCUCGGGA- -5'
13017 3' -58.8 NC_003390.1 + 18006 0.72 0.201726
Target:  5'- --aGCCGGAGaacuUCUCAGGAGCCUa -3'
miRNA:   3'- uagUGGCCUCagc-AGAGUCCUCGGGa -5'
13017 3' -58.8 NC_003390.1 + 7490 1.05 0.00068
Target:  5'- gAUCACCGGAGUCGUCUCAGGAGCCCUu -3'
miRNA:   3'- -UAGUGGCCUCAGCAGAGUCCUCGGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.