Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13017 | 5' | -44.6 | NC_003390.1 | + | 41090 | 0.66 | 0.997963 |
|
Target: 5'- uUGGGGGCAUAccagguguuAGCACcaugCUGGAGGu -3' miRNA: 3'- -ACUCUUGUGUaau------UUGUGa---GACCUCU- -5' |
|||||||
| 13017 | 5' | -44.6 | NC_003390.1 | + | 10225 | 0.67 | 0.993824 |
|
Target: 5'- aUGAGAGCAUu----ACGCUCacGGGGGu -3' miRNA: 3'- -ACUCUUGUGuaauuUGUGAGa-CCUCU- -5' |
|||||||
| 13017 | 5' | -44.6 | NC_003390.1 | + | 24800 | 0.67 | 0.99272 |
|
Target: 5'- cGAGGcuauguaccuACGCA---AACuCUCUGGAGAu -3' miRNA: 3'- aCUCU----------UGUGUaauUUGuGAGACCUCU- -5' |
|||||||
| 13017 | 5' | -44.6 | NC_003390.1 | + | 20138 | 0.71 | 0.955264 |
|
Target: 5'- uUGAG--UACAUUAAACAauuaCUGGAGAa -3' miRNA: 3'- -ACUCuuGUGUAAUUUGUga--GACCUCU- -5' |
|||||||
| 13017 | 5' | -44.6 | NC_003390.1 | + | 29652 | 0.71 | 0.955264 |
|
Target: 5'- uUGAG--UACAUUAAACAauuaCUGGAGAa -3' miRNA: 3'- -ACUCuuGUGUAAUUUGUga--GACCUCU- -5' |
|||||||
| 13017 | 5' | -44.6 | NC_003390.1 | + | 7452 | 1.11 | 0.008336 |
|
Target: 5'- cUGAGAACACAUUAAACACUCUGGAGAu -3' miRNA: 3'- -ACUCUUGUGUAAUUUGUGAGACCUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home