miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13018 5' -61.8 NC_003390.1 + 10127 0.66 0.333207
Target:  5'- aGGuGCAGCuauaaccgagCAGgAGCUCgaUGCCCuCUCc -3'
miRNA:   3'- -CCuCGUCG----------GUCgUCGAGg-ACGGG-GAG- -5'
13018 5' -61.8 NC_003390.1 + 27254 0.66 0.302469
Target:  5'- aGGAGUcuugaacuugccAGCCAGgGGCUCa-GCCucagCCUCa -3'
miRNA:   3'- -CCUCG------------UCGGUCgUCGAGgaCGG----GGAG- -5'
13018 5' -61.8 NC_003390.1 + 29852 0.67 0.278791
Target:  5'- uGGAGCaugGGCCAGCAGC-CUgugacucugacaagUGUCUCUUc -3'
miRNA:   3'- -CCUCG---UCGGUCGUCGaGG--------------ACGGGGAG- -5'
13018 5' -61.8 NC_003390.1 + 19939 0.67 0.273277
Target:  5'- uGGAGCaugGGCCAGCAGC-CUggacucugacaagUGUCUCUUc -3'
miRNA:   3'- -CCUCG---UCGGUCGUCGaGG-------------ACGGGGAG- -5'
13018 5' -61.8 NC_003390.1 + 3458 0.67 0.254024
Target:  5'- -aGGCAGCCAGgaacauccaaGGCUCCccaGCaCCCUCc -3'
miRNA:   3'- ccUCGUCGGUCg---------UCGAGGa--CG-GGGAG- -5'
13018 5' -61.8 NC_003390.1 + 513 0.69 0.208838
Target:  5'- cGAGCAGCgcaagCAGCAGCUCUucuacuuugcugagaUGgCUCUCa -3'
miRNA:   3'- cCUCGUCG-----GUCGUCGAGG---------------ACgGGGAG- -5'
13018 5' -61.8 NC_003390.1 + 5701 0.69 0.190968
Target:  5'- --cGCAGCCAGaCuGC-CCgUGCCCCUa -3'
miRNA:   3'- ccuCGUCGGUC-GuCGaGG-ACGGGGAg -5'
13018 5' -61.8 NC_003390.1 + 34150 0.69 0.181095
Target:  5'- -cGGCAGCUAGC-GCUCCccccaugGCCCCc- -3'
miRNA:   3'- ccUCGUCGGUCGuCGAGGa------CGGGGag -5'
13018 5' -61.8 NC_003390.1 + 32309 0.7 0.160088
Target:  5'- gGGAGCAGcCCGGCGacaaccacuucguuGUguauugggagaaggUCCUGCCCCa- -3'
miRNA:   3'- -CCUCGUC-GGUCGU--------------CG--------------AGGACGGGGag -5'
13018 5' -61.8 NC_003390.1 + 7771 0.71 0.13825
Target:  5'- aGGGGCGgauGCCugAGCAGCUUUaGCCuCCUCg -3'
miRNA:   3'- -CCUCGU---CGG--UCGUCGAGGaCGG-GGAG- -5'
13018 5' -61.8 NC_003390.1 + 27221 0.73 0.100874
Target:  5'- aGGAGCAGCCAGaggccucugaggaAGCUCCUGUCg--- -3'
miRNA:   3'- -CCUCGUCGGUCg------------UCGAGGACGGggag -5'
13018 5' -61.8 NC_003390.1 + 7813 1.11 0.000106
Target:  5'- uGGAGCAGCCAGCAGCUCCUGCCCCUCa -3'
miRNA:   3'- -CCUCGUCGGUCGUCGAGGACGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.