miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13019 5' -49 NC_003390.1 + 2170 0.66 0.942535
Target:  5'- uGGCAAUGCuGcuaAGGGCCGGGGUGg -3'
miRNA:   3'- cCUGUUACGuCaagUUCCGGUUCUGC- -5'
13019 5' -49 NC_003390.1 + 38249 0.67 0.919294
Target:  5'- aGGGCGA-GCAGggucuaCAGGGCCcacAGGGCc -3'
miRNA:   3'- -CCUGUUaCGUCaa----GUUCCGG---UUCUGc -5'
13019 5' -49 NC_003390.1 + 38413 0.67 0.912711
Target:  5'- uGACGGUGCuGUUggccccCAAGGCCcagAAGGCc -3'
miRNA:   3'- cCUGUUACGuCAA------GUUCCGG---UUCUGc -5'
13019 5' -49 NC_003390.1 + 6930 0.68 0.883352
Target:  5'- aGGGCccGUGCAGg-CAAGGCUAcAGAUGc -3'
miRNA:   3'- -CCUGu-UACGUCaaGUUCCGGU-UCUGC- -5'
13019 5' -49 NC_003390.1 + 31291 0.68 0.875278
Target:  5'- uGACGGUGUAGUuguagcagUCGcAGGCCAGG-Ca -3'
miRNA:   3'- cCUGUUACGUCA--------AGU-UCCGGUUCuGc -5'
13019 5' -49 NC_003390.1 + 1888 0.69 0.840252
Target:  5'- --cCAGUGgAGggUCGAGGCUGAGGCa -3'
miRNA:   3'- ccuGUUACgUCa-AGUUCCGGUUCUGc -5'
13019 5' -49 NC_003390.1 + 27539 0.69 0.840252
Target:  5'- cGGACGGUGUAGUcCAcGGUCuucucGGACa -3'
miRNA:   3'- -CCUGUUACGUCAaGUuCCGGu----UCUGc -5'
13019 5' -49 NC_003390.1 + 36275 0.71 0.759234
Target:  5'- gGGAUAA-GCcGUgCAAGGCC-AGACGa -3'
miRNA:   3'- -CCUGUUaCGuCAaGUUCCGGuUCUGC- -5'
13019 5' -49 NC_003390.1 + 24624 0.72 0.708008
Target:  5'- gGGACugagcugauuAUGCAGgUCAcuggcauccccaagaGGGCCAAGugGa -3'
miRNA:   3'- -CCUGu---------UACGUCaAGU---------------UCCGGUUCugC- -5'
13019 5' -49 NC_003390.1 + 15152 0.72 0.668939
Target:  5'- aGACAccGUAGcUCAAGGCCAcuGGCGu -3'
miRNA:   3'- cCUGUuaCGUCaAGUUCCGGUu-CUGC- -5'
13019 5' -49 NC_003390.1 + 21836 0.73 0.657341
Target:  5'- gGGACAG-GUGG---AGGGCCAGGACGg -3'
miRNA:   3'- -CCUGUUaCGUCaagUUCCGGUUCUGC- -5'
13019 5' -49 NC_003390.1 + 9154 1.13 0.00197
Target:  5'- uGGACAAUGCAGUUCAAGGCCAAGACGg -3'
miRNA:   3'- -CCUGUUACGUCAAGUUCCGGUUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.