miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1302 3' -61.9 NC_001331.1 + 4301 0.66 0.070965
Target:  5'- uCCCgGCCgGCGG-CGcGGCCCgccccucauGGCGGCa -3'
miRNA:   3'- cGGGgCGG-CGUUaGC-CUGGG---------CCGUCG- -5'
1302 3' -61.9 NC_001331.1 + 2212 0.66 0.068731
Target:  5'- gGCCCCGaa------GGcCCCGGCGGCg -3'
miRNA:   3'- -CGGGGCggcguuagCCuGGGCCGUCG- -5'
1302 3' -61.9 NC_001331.1 + 2241 0.67 0.062426
Target:  5'- uCgCCGCCGgGGccuUCGGGgCCGGUggAGCa -3'
miRNA:   3'- cGgGGCGGCgUU---AGCCUgGGCCG--UCG- -5'
1302 3' -61.9 NC_001331.1 + 2045 0.67 0.062426
Target:  5'- uGCCaucgCCGCCGCcGUCaccGCCCGGCGu- -3'
miRNA:   3'- -CGG----GGCGGCGuUAGcc-UGGGCCGUcg -5'
1302 3' -61.9 NC_001331.1 + 366 0.67 0.056682
Target:  5'- aGCCCCGC----GUCcGGCCCaGCAGCc -3'
miRNA:   3'- -CGGGGCGgcguUAGcCUGGGcCGUCG- -5'
1302 3' -61.9 NC_001331.1 + 771 0.69 0.041008
Target:  5'- aGCCCCGUCacgaaCGAUCccaGGACgCCaGCGGCa -3'
miRNA:   3'- -CGGGGCGGc----GUUAG---CCUG-GGcCGUCG- -5'
1302 3' -61.9 NC_001331.1 + 3387 0.69 0.039697
Target:  5'- aCCUCGCgGUGAUCGGcaucCCUGGCcGCu -3'
miRNA:   3'- cGGGGCGgCGUUAGCCu---GGGCCGuCG- -5'
1302 3' -61.9 NC_001331.1 + 403 0.7 0.033077
Target:  5'- gGCCCUGCggcugcugggccggaCGCGGggcUUGGGCCUGGCuuGCg -3'
miRNA:   3'- -CGGGGCG---------------GCGUU---AGCCUGGGCCGu-CG- -5'
1302 3' -61.9 NC_001331.1 + 3254 0.7 0.029601
Target:  5'- cGCCCCaugggcugGCuCGaCGcUUGGACCCGGCAccgGCa -3'
miRNA:   3'- -CGGGG--------CG-GC-GUuAGCCUGGGCCGU---CG- -5'
1302 3' -61.9 NC_001331.1 + 7009 0.71 0.026834
Target:  5'- cGCCCCG-CGCuccCGaGcACUCGGCGGCa -3'
miRNA:   3'- -CGGGGCgGCGuuaGC-C-UGGGCCGUCG- -5'
1302 3' -61.9 NC_001331.1 + 2805 1.13 5e-06
Target:  5'- aGCCCCGCCGCAAUCGGACCCGGCAGCg -3'
miRNA:   3'- -CGGGGCGGCGUUAGCCUGGGCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.