miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13020 3' -47.5 NC_003390.1 + 42939 0.66 0.978781
Target:  5'- cGAGuUUCUCCUCcauaCGGUugAGAGUg -3'
miRNA:   3'- uCUUcAAGAGGAGuc--GUUAugUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 10778 0.67 0.962339
Target:  5'- -cAGGggCUCCUCGGguGUA-GGAGUg -3'
miRNA:   3'- ucUUCaaGAGGAGUCguUAUgUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 26845 0.67 0.962339
Target:  5'- uGAAGUcagagaUCUCCUCAGCugc-CAGguuguuGGCg -3'
miRNA:   3'- uCUUCA------AGAGGAGUCGuuauGUC------UCG- -5'
13020 3' -47.5 NC_003390.1 + 36064 0.67 0.962339
Target:  5'- aGGggGaaCUUCUCAGCAu--CAGAcaaGCu -3'
miRNA:   3'- -UCuuCaaGAGGAGUCGUuauGUCU---CG- -5'
13020 3' -47.5 NC_003390.1 + 6065 0.67 0.962339
Target:  5'- cAGggGUgaaCUUCUCAGgGA-ACAGcAGCu -3'
miRNA:   3'- -UCuuCAa--GAGGAGUCgUUaUGUC-UCG- -5'
13020 3' -47.5 NC_003390.1 + 28854 0.67 0.958209
Target:  5'- uGAGGUUCUucuucCCUUGGUAcaGgAGAGCa -3'
miRNA:   3'- uCUUCAAGA-----GGAGUCGUuaUgUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 9707 0.67 0.953779
Target:  5'- uGGAGGUaCUgCUgGGUGAUGCugguGAGCu -3'
miRNA:   3'- -UCUUCAaGAgGAgUCGUUAUGu---CUCG- -5'
13020 3' -47.5 NC_003390.1 + 35938 0.67 0.949043
Target:  5'- uAGAAGcgaUCUCCgggCAGUccUACGGGGUu -3'
miRNA:   3'- -UCUUCa--AGAGGa--GUCGuuAUGUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 27275 0.68 0.946052
Target:  5'- cAGggGcUCagCCUCAGCcucagccugcucaaaGcgGCGGAGCu -3'
miRNA:   3'- -UCuuCaAGa-GGAGUCG---------------UuaUGUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 18068 0.68 0.943995
Target:  5'- gAGAAGUUCUCCggcUUGGaGAUcCAGGGUg -3'
miRNA:   3'- -UCUUCAAGAGG---AGUCgUUAuGUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 23166 0.68 0.938631
Target:  5'- uAGAGGcug-CCaUCAGCAGUACcucuGGAGCc -3'
miRNA:   3'- -UCUUCaagaGG-AGUCGUUAUG----UCUCG- -5'
13020 3' -47.5 NC_003390.1 + 17574 0.68 0.932948
Target:  5'- ------aCUCCUCGGUAAUcagACGGAGUu -3'
miRNA:   3'- ucuucaaGAGGAGUCGUUA---UGUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 18649 0.69 0.884243
Target:  5'- cAGAGGUUgUCUUUAGCcaccGCAGcAGCg -3'
miRNA:   3'- -UCUUCAAgAGGAGUCGuua-UGUC-UCG- -5'
13020 3' -47.5 NC_003390.1 + 3269 0.7 0.840415
Target:  5'- ------cCUCCUCAGCAAagaGGAGCa -3'
miRNA:   3'- ucuucaaGAGGAGUCGUUaugUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 39500 0.7 0.840415
Target:  5'- cGAGGgUCUUCUCccgccugagaGGC-AUACAGAGCc -3'
miRNA:   3'- uCUUCaAGAGGAG----------UCGuUAUGUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 31356 0.71 0.810992
Target:  5'- aAGAAGggCUCCUCcucaggaucgagAGUGAUGCAGAc- -3'
miRNA:   3'- -UCUUCaaGAGGAG------------UCGUUAUGUCUcg -5'
13020 3' -47.5 NC_003390.1 + 9852 0.71 0.800731
Target:  5'- uGggGUUCaCaaCAGCAuUGCGGAGCu -3'
miRNA:   3'- uCuuCAAGaGgaGUCGUuAUGUCUCG- -5'
13020 3' -47.5 NC_003390.1 + 39035 0.73 0.700835
Target:  5'- gAGAAGUUCUCCUCccGCAaguAUGCAucuGCu -3'
miRNA:   3'- -UCUUCAAGAGGAGu-CGU---UAUGUcu-CG- -5'
13020 3' -47.5 NC_003390.1 + 9451 1.14 0.002169
Target:  5'- aAGAAGUUCUCCUCAGCAAUACAGAGCa -3'
miRNA:   3'- -UCUUCAAGAGGAGUCGUUAUGUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.