miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13025 5' -55 NC_003390.1 + 9161 0.68 0.554407
Target:  5'- gGuGCCcuGGACAauGcAGUUCAAGGCCa -3'
miRNA:   3'- aC-CGGu-UCUGUggCaUCGAGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 30918 0.68 0.543459
Target:  5'- cGGCCAuaGCcugcagcaGCCgGUGGCUgAGGGCUg -3'
miRNA:   3'- aCCGGUucUG--------UGG-CAUCGAgUUCCGG- -5'
13025 5' -55 NC_003390.1 + 3568 0.68 0.521786
Target:  5'- aUGGCCccucAGACgguuacaagACgGUGGCU-GAGGCCg -3'
miRNA:   3'- -ACCGGu---UCUG---------UGgCAUCGAgUUCCGG- -5'
13025 5' -55 NC_003390.1 + 23197 0.7 0.40993
Target:  5'- aUGGCCAccucAGACACCaagccgGUgaAGCUaGAGGCUg -3'
miRNA:   3'- -ACCGGU----UCUGUGG------CA--UCGAgUUCCGG- -5'
13025 5' -55 NC_003390.1 + 15304 0.71 0.382087
Target:  5'- gGGCCAAGAaauaCGUGGaaagaucaugCAAGGCCu -3'
miRNA:   3'- aCCGGUUCUgug-GCAUCga--------GUUCCGG- -5'
13025 5' -55 NC_003390.1 + 37984 0.72 0.359868
Target:  5'- aGGaCCAaagggugacaagggAGACACUGgcgacccagguGCUCAAGGCCc -3'
miRNA:   3'- aCC-GGU--------------UCUGUGGCau---------CGAGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 7016 0.74 0.262674
Target:  5'- aUGGCUAAGAcCGCCGcugagGGCUCuguacuGGGCUu -3'
miRNA:   3'- -ACCGGUUCU-GUGGCa----UCGAGu-----UCCGG- -5'
13025 5' -55 NC_003390.1 + 32013 0.75 0.230213
Target:  5'- cUGGCCcuuGCGCuuuCGUAGCUCAGgGGCCa -3'
miRNA:   3'- -ACCGGuucUGUG---GCAUCGAGUU-CCGG- -5'
13025 5' -55 NC_003390.1 + 27792 0.79 0.114936
Target:  5'- cUGGCUAAGACGCCuaUGGCUgAgcAGGCCa -3'
miRNA:   3'- -ACCGGUUCUGUGGc-AUCGAgU--UCCGG- -5'
13025 5' -55 NC_003390.1 + 15159 1.13 0.000434
Target:  5'- gUGGCCAAGACACCGUAGCUCAAGGCCa -3'
miRNA:   3'- -ACCGGUUCUGUGGCAUCGAGUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.