miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1303 3' -53.5 NC_001331.1 + 6916 0.67 0.209447
Target:  5'- uCACCgUUCCGGcGAACGGaagcacggGCGGAGCGc -3'
miRNA:   3'- -GUGG-AGGGUUaCUUGCCg-------UGCUUCGC- -5'
1303 3' -53.5 NC_001331.1 + 7013 0.67 0.190549
Target:  5'- cCGCgCUCCCGAgcacucGGCGGCAa-GAGCGg -3'
miRNA:   3'- -GUG-GAGGGUUac----UUGCCGUgcUUCGC- -5'
1303 3' -53.5 NC_001331.1 + 4306 0.7 0.125041
Target:  5'- uGCgCUCCCGGccGGCGGCGCGGcccgccccucauGGCGg -3'
miRNA:   3'- gUG-GAGGGUUacUUGCCGUGCU------------UCGC- -5'
1303 3' -53.5 NC_001331.1 + 6128 0.7 0.120976
Target:  5'- cCGCCUgCgAGcaGAACGGCGCGguGCGg -3'
miRNA:   3'- -GUGGAgGgUUa-CUUGCCGUGCuuCGC- -5'
1303 3' -53.5 NC_001331.1 + 2900 1.08 0.000103
Target:  5'- uCACCUCCCAAUGAACGGCACGAAGCGc -3'
miRNA:   3'- -GUGGAGGGUUACUUGCCGUGCUUCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.