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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13032 | 3' | -53.9 | NC_003390.1 | + | 25975 | 1.05 | 0.001941 |
Target: 5'- cCAAGACGGCGGCUUCUCCGUCAACAUc -3' miRNA: 3'- -GUUCUGCCGCCGAAGAGGCAGUUGUA- -5' |
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13032 | 3' | -53.9 | NC_003390.1 | + | 3586 | 0.7 | 0.492653 |
Target: 5'- aCAAGACGGUGGCUgaggCCGcCAuCAa -3' miRNA: 3'- -GUUCUGCCGCCGAaga-GGCaGUuGUa -5' |
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13032 | 3' | -53.9 | NC_003390.1 | + | 14317 | 0.67 | 0.670793 |
Target: 5'- -cGGACGGCuGCggaaaUCUCUGUCAAgGa -3' miRNA: 3'- guUCUGCCGcCGa----AGAGGCAGUUgUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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