miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13032 5' -51.7 NC_003390.1 + 27785 0.66 0.84853
Target:  5'- aGACGCC--UAugGCUgagCAGGCCAUg- -3'
miRNA:   3'- aUUGUGGuuGUugCGA---GUCCGGUAgc -5'
13032 5' -51.7 NC_003390.1 + 1726 0.66 0.830111
Target:  5'- gAACGCCcGCuuCGCUggcCAGGCCuacCGg -3'
miRNA:   3'- aUUGUGGuUGuuGCGA---GUCCGGua-GC- -5'
13032 5' -51.7 NC_003390.1 + 22710 0.66 0.830111
Target:  5'- ---aACCAGCAaccuuACGCUCuuGGCCuUCa -3'
miRNA:   3'- auugUGGUUGU-----UGCGAGu-CCGGuAGc -5'
13032 5' -51.7 NC_003390.1 + 37376 0.67 0.790619
Target:  5'- --uCACUAACAGCacuGCUCAGuCCAUCc -3'
miRNA:   3'- auuGUGGUUGUUG---CGAGUCcGGUAGc -5'
13032 5' -51.7 NC_003390.1 + 11294 0.67 0.790619
Target:  5'- gAGCGCCGAgGACGUggccGCCAUCu -3'
miRNA:   3'- aUUGUGGUUgUUGCGagucCGGUAGc -5'
13032 5' -51.7 NC_003390.1 + 7155 0.67 0.790619
Target:  5'- cGGCACCAGCGAaaccucCGCUCGcaGCCAUg- -3'
miRNA:   3'- aUUGUGGUUGUU------GCGAGUc-CGGUAgc -5'
13032 5' -51.7 NC_003390.1 + 39248 0.67 0.759054
Target:  5'- aUAGCACCAGCAGCcuGCUCAuGaCuCAUUGg -3'
miRNA:   3'- -AUUGUGGUUGUUG--CGAGUcC-G-GUAGC- -5'
13032 5' -51.7 NC_003390.1 + 44320 0.68 0.737275
Target:  5'- cAGCACCAGCAAC-CUCcuGGGCgAUg- -3'
miRNA:   3'- aUUGUGGUUGUUGcGAG--UCCGgUAgc -5'
13032 5' -51.7 NC_003390.1 + 21776 0.68 0.725092
Target:  5'- cAACACCAGCGAUGgacccguCUgGGGCCAcCa -3'
miRNA:   3'- aUUGUGGUUGUUGC-------GAgUCCGGUaGc -5'
13032 5' -51.7 NC_003390.1 + 6894 0.68 0.715031
Target:  5'- cUAGCGCCuGCAaggaAUGCUCccauGCCAUCGa -3'
miRNA:   3'- -AUUGUGGuUGU----UGCGAGuc--CGGUAGC- -5'
13032 5' -51.7 NC_003390.1 + 38003 0.68 0.715031
Target:  5'- aUGGCGCUGAUGGCGCUCaAGGaCCAa-- -3'
miRNA:   3'- -AUUGUGGUUGUUGCGAG-UCC-GGUagc -5'
13032 5' -51.7 NC_003390.1 + 7501 0.68 0.703768
Target:  5'- cUAGCAgCAGC-ACGCUCuuGGGCgAUCu -3'
miRNA:   3'- -AUUGUgGUUGuUGCGAG--UCCGgUAGc -5'
13032 5' -51.7 NC_003390.1 + 24229 0.69 0.692428
Target:  5'- cAGCACCAAUggUGaC-CAGGCCcUCa -3'
miRNA:   3'- aUUGUGGUUGuuGC-GaGUCCGGuAGc -5'
13032 5' -51.7 NC_003390.1 + 8922 0.69 0.692428
Target:  5'- aUAACACCAAC-ACGCUCacccaaAGGCUg--- -3'
miRNA:   3'- -AUUGUGGUUGuUGCGAG------UCCGGuagc -5'
13032 5' -51.7 NC_003390.1 + 27920 0.69 0.658074
Target:  5'- aAGCGCCuGCAGCaGCcCAGGgUAUCGa -3'
miRNA:   3'- aUUGUGGuUGUUG-CGaGUCCgGUAGC- -5'
13032 5' -51.7 NC_003390.1 + 28382 0.7 0.611952
Target:  5'- cUAGCAgCCAAUGGCGCgaucauccaGGGCCGUCc -3'
miRNA:   3'- -AUUGU-GGUUGUUGCGag-------UCCGGUAGc -5'
13032 5' -51.7 NC_003390.1 + 10729 0.7 0.611952
Target:  5'- cUGGCcCCGACGGCGCUU-GGCUacGUCGa -3'
miRNA:   3'- -AUUGuGGUUGUUGCGAGuCCGG--UAGC- -5'
13032 5' -51.7 NC_003390.1 + 25940 0.97 0.010952
Target:  5'- gUAACACCAACAACGCUCAGGCCA-CGu -3'
miRNA:   3'- -AUUGUGGUUGUUGCGAGUCCGGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.