miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13033 3' -53.5 NC_003390.1 + 40115 0.77 0.188894
Target:  5'- -cACG-AGUCCAagaGCGGUAACAGCAGCa -3'
miRNA:   3'- cuUGCgUCGGGU---UGUCGUUGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 26932 0.66 0.742741
Target:  5'- gGAugGCGGCCUcAUGGCGGCcuugaccuGCuGCu -3'
miRNA:   3'- -CUugCGUCGGGuUGUCGUUGu-------CGuCG- -5'
13033 3' -53.5 NC_003390.1 + 42669 0.66 0.709605
Target:  5'- aGAGuCuuAGCCCAGaAGCu-CAGCAGCu -3'
miRNA:   3'- -CUU-GcgUCGGGUUgUCGuuGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 1778 0.67 0.641445
Target:  5'- -cACGUuGCUCAAUAcuGCAACGGCuGGCg -3'
miRNA:   3'- cuUGCGuCGGGUUGU--CGUUGUCG-UCG- -5'
13033 3' -53.5 NC_003390.1 + 39237 0.68 0.629983
Target:  5'- uGAugGa--UCCGAUAGCAcCAGCAGCc -3'
miRNA:   3'- -CUugCgucGGGUUGUCGUuGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 30916 0.68 0.629983
Target:  5'- ---gGCGGCCauagccuGCAGCAGcCGGUGGCu -3'
miRNA:   3'- cuugCGUCGGgu-----UGUCGUU-GUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 9324 0.68 0.618524
Target:  5'- uAGCGaucuGUCCAGCaaucuccuuAGCAGCAGCAGa -3'
miRNA:   3'- cUUGCgu--CGGGUUG---------UCGUUGUCGUCg -5'
13033 3' -53.5 NC_003390.1 + 27309 0.68 0.584265
Target:  5'- cGGCGgAGCUUGucuuCAGCuuCAGCGGCg -3'
miRNA:   3'- cUUGCgUCGGGUu---GUCGuuGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 42535 0.68 0.584265
Target:  5'- ---aGCGGCCCGGaGGuCGGCGGUAGUc -3'
miRNA:   3'- cuugCGUCGGGUUgUC-GUUGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 24227 0.69 0.547037
Target:  5'- ---aGCAGCaCCAAUGGUgaccaggcccucagGGCGGCGGCu -3'
miRNA:   3'- cuugCGUCG-GGUUGUCG--------------UUGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 38931 0.7 0.506243
Target:  5'- --cUGUgaaGGCCuUAGCAGCuuCAGCAGCa -3'
miRNA:   3'- cuuGCG---UCGG-GUUGUCGuuGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 5575 0.75 0.248658
Target:  5'- --gUGuCAGCCaCAGCAGaGGCAGCAGCg -3'
miRNA:   3'- cuuGC-GUCGG-GUUGUCgUUGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 501 0.75 0.255426
Target:  5'- --cCGCuaccaAGCCgAGCAGCGcaaGCAGCAGCu -3'
miRNA:   3'- cuuGCG-----UCGGgUUGUCGU---UGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 25824 0.75 0.262343
Target:  5'- aGAACGCucGUCgAGCA-CAGCAGCAGCu -3'
miRNA:   3'- -CUUGCGu-CGGgUUGUcGUUGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 7480 0.74 0.291542
Target:  5'- ---aGCuGCUCGGCAGCcucaccccuAGCAGCAGCa -3'
miRNA:   3'- cuugCGuCGGGUUGUCG---------UUGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 45652 0.74 0.30707
Target:  5'- ---aGCAGUggAACAGCAGCAGCAGa -3'
miRNA:   3'- cuugCGUCGggUUGUCGUUGUCGUCg -5'
13033 3' -53.5 NC_003390.1 + 1545 0.73 0.323222
Target:  5'- cAGC-CGGCCCGGCAGgGGCAGCAc- -3'
miRNA:   3'- cUUGcGUCGGGUUGUCgUUGUCGUcg -5'
13033 3' -53.5 NC_003390.1 + 46008 0.71 0.423057
Target:  5'- ---aGCGGUaCUAACAGCAgcgcuagaguccGCAGCAGCc -3'
miRNA:   3'- cuugCGUCG-GGUUGUCGU------------UGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 1066 0.66 0.698378
Target:  5'- aGACGgucaacuuCAGCCCGAUAaacgaacuGCuugGCAGCAGCc -3'
miRNA:   3'- cUUGC--------GUCGGGUUGU--------CGu--UGUCGUCG- -5'
13033 3' -53.5 NC_003390.1 + 42326 0.8 0.112623
Target:  5'- uGAAUGCAGCCCGccgcaaagACGGCAAUuaugggaagGGCGGCa -3'
miRNA:   3'- -CUUGCGUCGGGU--------UGUCGUUG---------UCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.