miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
13033	5'	-59.7	NC_003390.1	+	38063	0.66	0.462573
	Target:  5'- gUGCUGAUGGGGCUaCCGggCCUGaAGg -3' miRNA:   3'- gGCGGCUACUCCGGcGGUa-GGACgUC- -5'
13033	5'	-59.7	NC_003390.1	+	45747	0.66	0.452847
	Target:  5'- -aGCUGAUGuGGCauuGCCAUCa-GCGGu -3' miRNA:   3'- ggCGGCUACuCCGg--CGGUAGgaCGUC- -5'
13033	5'	-59.7	NC_003390.1	+	1865	0.67	0.415102
	Target:  5'- -gGCuUGA-GGGGCCGCCAgCCguUGCAGu -3' miRNA:   3'- ggCG-GCUaCUCCGGCGGUaGG--ACGUC- -5'
13033	5'	-59.7	NC_003390.1	+	3591	0.69	0.299396
	Target:  5'- aCGgUGGcUGAGGCCGCCAUCaaGUAc -3' miRNA:   3'- gGCgGCU-ACUCCGGCGGUAGgaCGUc -5'
13033	5'	-59.7	NC_003390.1	+	30900	0.69	0.292159
	Target:  5'- -aGCuCGAUGcguaguGGGCgGCCAUagCCUGCAGc -3' miRNA:   3'- ggCG-GCUAC------UCCGgCGGUA--GGACGUC- -5'
13033	5'	-59.7	NC_003390.1	+	23178	0.73	0.165395
	Target:  5'- -aGCCGGUgaagcuaGAGGCUGCCAUCa-GCAGu -3' miRNA:   3'- ggCGGCUA-------CUCCGGCGGUAGgaCGUC- -5'
13033	5'	-59.7	NC_003390.1	+	11296	0.75	0.123094
	Target:  5'- gCGCCGAggacGuGGCCGCCAUCUucgGCAc -3' miRNA:   3'- gGCGGCUa---CuCCGGCGGUAGGa--CGUc -5'
13033	5'	-59.7	NC_003390.1	+	26999	1.09	0.000304
	Target:  5'- gCCGCCGAUGAGGCCGCCAUCCUGCAGu -3' miRNA:   3'- -GGCGGCUACUCCGGCGGUAGGACGUC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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