miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13035 5' -54.6 NC_003390.1 + 10696 0.67 0.585617
Target:  5'- cUCGCUAcCGGCAcuccuaCACCcgagGAGCCCCu -3'
miRNA:   3'- aAGUGGUaGUCGUug----GUGG----UUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 8859 0.67 0.585617
Target:  5'- aUCugCcgUGGCccCUACaCAGGCCCCa -3'
miRNA:   3'- aAGugGuaGUCGuuGGUG-GUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 17064 0.67 0.574364
Target:  5'- cUCACCcUCuuucGCAACCACCuacuugcuaagaGGGCCUa -3'
miRNA:   3'- aAGUGGuAGu---CGUUGGUGG------------UUCGGGg -5'
13035 5' -54.6 NC_003390.1 + 11311 0.68 0.563162
Target:  5'- -cCGCCAucuUCGGC-ACCACCuccGGCUUCa -3'
miRNA:   3'- aaGUGGU---AGUCGuUGGUGGu--UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 34315 0.68 0.552019
Target:  5'- --aGCCGUCugAGCGGCUugUAGGgCCCu -3'
miRNA:   3'- aagUGGUAG--UCGUUGGugGUUCgGGG- -5'
13035 5' -54.6 NC_003390.1 + 37825 0.69 0.508199
Target:  5'- -gCcCCAUCAGC-ACCGUC-AGCCCCu -3'
miRNA:   3'- aaGuGGUAGUCGuUGGUGGuUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 5706 0.69 0.508199
Target:  5'- -aCGCUcgCAGCcaGACUGCCcguGCCCCu -3'
miRNA:   3'- aaGUGGuaGUCG--UUGGUGGuu-CGGGG- -5'
13035 5' -54.6 NC_003390.1 + 24216 0.69 0.48684
Target:  5'- -gUACCAUaacCAGCAGCaccaauggugACCAGGCCCUc -3'
miRNA:   3'- aaGUGGUA---GUCGUUGg---------UGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 44272 0.69 0.476321
Target:  5'- cUUCuCCAUgCAGCAca-ACCAGGUCCCa -3'
miRNA:   3'- -AAGuGGUA-GUCGUuggUGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 23159 0.69 0.475276
Target:  5'- --uGCCAUCAGCAguaccucuggaGCCAuucuguuugguaaUCAAGCCCa -3'
miRNA:   3'- aagUGGUAGUCGU-----------UGGU-------------GGUUCGGGg -5'
13035 5' -54.6 NC_003390.1 + 1673 0.69 0.465916
Target:  5'- --aACCucuUCGGguACguagCACCGGGCCCCa -3'
miRNA:   3'- aagUGGu--AGUCguUG----GUGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 38151 0.69 0.46385
Target:  5'- -gCACCAUCGGCcccuggaaggcCCugUggGCCCUg -3'
miRNA:   3'- aaGUGGUAGUCGuu---------GGugGuuCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 31121 0.69 0.454609
Target:  5'- aUCACCAUCAuGC-GCCACCAcuGCaucaugaCCCa -3'
miRNA:   3'- aAGUGGUAGU-CGuUGGUGGUu-CG-------GGG- -5'
13035 5' -54.6 NC_003390.1 + 10093 0.7 0.445468
Target:  5'- cUCuCCAUaucCGGCAuugGCgGCCAGGCCCUc -3'
miRNA:   3'- aAGuGGUA---GUCGU---UGgUGGUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 40888 0.7 0.44446
Target:  5'- -cCACCAUCccaAGCAacACCACCAauguuggagagacGGCCUUa -3'
miRNA:   3'- aaGUGGUAG---UCGU--UGGUGGU-------------UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 2404 0.7 0.405182
Target:  5'- gUCACUAaCGGCuuCCACCAcuccaccGGCaCCCg -3'
miRNA:   3'- aAGUGGUaGUCGuuGGUGGU-------UCG-GGG- -5'
13035 5' -54.6 NC_003390.1 + 38500 0.71 0.378109
Target:  5'- -gCACCGUCAGCu-CCAggAGGUCCCu -3'
miRNA:   3'- aaGUGGUAGUCGuuGGUggUUCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 47150 0.71 0.36906
Target:  5'- aUgAUC-UCAGCAGgCACCAgaccAGCCCCu -3'
miRNA:   3'- aAgUGGuAGUCGUUgGUGGU----UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 38004 0.71 0.348816
Target:  5'- -gCcCCAUCAGCAccgucguuaccuggAUCACCuuuuAGCCCCu -3'
miRNA:   3'- aaGuGGUAGUCGU--------------UGGUGGu---UCGGGG- -5'
13035 5' -54.6 NC_003390.1 + 21659 0.72 0.342814
Target:  5'- -aUACUuUUGGCAGCCACCAcuuGGCUCCc -3'
miRNA:   3'- aaGUGGuAGUCGUUGGUGGU---UCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.