Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13039 | 5' | -53.5 | NC_003390.1 | + | 32226 | 0.66 | 0.797172 |
Target: 5'- -cACGAGG-UGGGCCaCUgCUUCgGCUu -3' miRNA: 3'- ccUGUUCCaACCUGG-GAgGAAGgUGG- -5' |
|||||||
13039 | 5' | -53.5 | NC_003390.1 | + | 10557 | 0.68 | 0.670078 |
Target: 5'- uGGAaGGGGagGGAauuugaucCCUUCCUUCUGCCu -3' miRNA: 3'- -CCUgUUCCaaCCU--------GGGAGGAAGGUGG- -5' |
|||||||
13039 | 5' | -53.5 | NC_003390.1 | + | 38243 | 0.68 | 0.69217 |
Target: 5'- -aGCAGGGUcuacaGGGCCCacagggCCUUCCagggGCCg -3' miRNA: 3'- ccUGUUCCAa----CCUGGGa-----GGAAGG----UGG- -5' |
|||||||
13039 | 5' | -53.5 | NC_003390.1 | + | 36235 | 0.69 | 0.625542 |
Target: 5'- gGGGCgAAGGgaGGGCCCUCauaa-GCCg -3' miRNA: 3'- -CCUG-UUCCaaCCUGGGAGgaaggUGG- -5' |
|||||||
13039 | 5' | -53.5 | NC_003390.1 | + | 32399 | 1.15 | 0.000518 |
Target: 5'- aGGACAAGGUUGGACCCUCCUUCCACCg -3' miRNA: 3'- -CCUGUUCCAACCUGGGAGGAAGGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home