miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13041 5' -58.7 NC_003390.1 + 38813 0.66 0.466359
Target:  5'- --gAGGGGCUCcAAGGcaCCUCUcCCg -3'
miRNA:   3'- ucgUCCCCGAGaUUCCccGGAGAuGG- -5'
13041 5' -58.7 NC_003390.1 + 36543 0.66 0.466359
Target:  5'- --gAGGGcGCUUgguGGGGCUUCgcggGCCc -3'
miRNA:   3'- ucgUCCC-CGAGauuCCCCGGAGa---UGG- -5'
13041 5' -58.7 NC_003390.1 + 29470 0.66 0.464363
Target:  5'- gAGguGGGGCcacAGGGGGCCgugggggauCCg -3'
miRNA:   3'- -UCguCCCCGagaUUCCCCGGagau-----GG- -5'
13041 5' -58.7 NC_003390.1 + 10229 0.66 0.436891
Target:  5'- gAGCAuuacgcucacGGGGgUCUGAGGGGa-UCUGgCu -3'
miRNA:   3'- -UCGU----------CCCCgAGAUUCCCCggAGAUgG- -5'
13041 5' -58.7 NC_003390.1 + 43698 0.66 0.436891
Target:  5'- ---cGGGGC-CUGuGGGGCCUCa--- -3'
miRNA:   3'- ucguCCCCGaGAUuCCCCGGAGaugg -5'
13041 5' -58.7 NC_003390.1 + 1151 0.67 0.382221
Target:  5'- cGGCuuguGGGcGCUUguaggccccuuguGGGGCCuUCUGCCu -3'
miRNA:   3'- -UCGu---CCC-CGAGauu----------CCCCGG-AGAUGG- -5'
13041 5' -58.7 NC_003390.1 + 38748 0.68 0.363891
Target:  5'- gGGCuaggaAGGGGCUg-AGGGGGCUUUgggguagauggUACCu -3'
miRNA:   3'- -UCG-----UCCCCGAgaUUCCCCGGAG-----------AUGG- -5'
13041 5' -58.7 NC_003390.1 + 8781 0.68 0.363891
Target:  5'- cAGCuGGGGC-CUGuguAGGGGCCacgGCa -3'
miRNA:   3'- -UCGuCCCCGaGAU---UCCCCGGagaUGg -5'
13041 5' -58.7 NC_003390.1 + 1241 0.69 0.30277
Target:  5'- uGGCGGuggauucaaugugcuGGGCUCUGAGagccucuguacGGGCUUCgGCCu -3'
miRNA:   3'- -UCGUC---------------CCCGAGAUUC-----------CCCGGAGaUGG- -5'
13041 5' -58.7 NC_003390.1 + 7718 0.73 0.168816
Target:  5'- gGGCuAGGGGCagacucaggCUGAGGGGCaggagCUGCUg -3'
miRNA:   3'- -UCG-UCCCCGa--------GAUUCCCCGga---GAUGG- -5'
13041 5' -58.7 NC_003390.1 + 9121 0.73 0.159869
Target:  5'- cGCAGgaGGGUUgaGAGGGGCCUUgaaGCCu -3'
miRNA:   3'- uCGUC--CCCGAgaUUCCCCGGAGa--UGG- -5'
13041 5' -58.7 NC_003390.1 + 34070 1.1 0.000278
Target:  5'- uAGCAGGGGCUCUAAGGGGCCUCUACCc -3'
miRNA:   3'- -UCGUCCCCGAGAUUCCCCGGAGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.