Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 37865 | 0.9 | 0.026294 |
|
Target: 5'- uCCuGAAGGCCCUCAAGGUCcUCAGGGu -3' miRNA: 3'- -GGuCUUCCGGGAGUUCCAGaGGUUCC- -5' |
|||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 38323 | 0.8 | 0.135027 |
|
Target: 5'- gCAGGggcuacaAGGCCCUCAGGGaCUCCcAGGa -3' miRNA: 3'- gGUCU-------UCCGGGAGUUCCaGAGGuUCC- -5' |
|||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 38044 | 0.76 | 0.228032 |
|
Target: 5'- gCCuGAAGGUCCcCAGGGUCcUCAAGGu -3' miRNA: 3'- -GGuCUUCCGGGaGUUCCAGaGGUUCC- -5' |
|||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 38351 | 0.75 | 0.280961 |
|
Target: 5'- cCCA--GGGUCCUCAAGGcCUgCAGGGu -3' miRNA: 3'- -GGUcuUCCGGGAGUUCCaGAgGUUCC- -5' |
|||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 7709 | 0.73 | 0.351632 |
|
Target: 5'- cCCGGAgcucucGGGCCCUCugcccAGGUCUCUGguguGGa -3' miRNA: 3'- -GGUCU------UCCGGGAGu----UCCAGAGGUu---CC- -5' |
|||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 38242 | 0.71 | 0.442865 |
|
Target: 5'- gCAGGgucuacaGGGCCCaCAGGGcCUuCCAGGGg -3' miRNA: 3'- gGUCU-------UCCGGGaGUUCCaGA-GGUUCC- -5' |
|||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 38199 | 0.71 | 0.474066 |
|
Target: 5'- gCAGAcuccacuguuccGGGUCCUCAAGGUCcaaAAGGu -3' miRNA: 3'- gGUCU------------UCCGGGAGUUCCAGaggUUCC- -5' |
|||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 19085 | 0.66 | 0.776201 |
|
Target: 5'- cCUGGAAGGCCUUUAccugggcaucGGuGUCaucagggUCCAGGGu -3' miRNA: 3'- -GGUCUUCCGGGAGU----------UC-CAG-------AGGUUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home