Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13044 | 3' | -53.9 | NC_003390.1 | + | 34261 | 0.72 | 0.396016 |
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Target: 5'- cCUAGGAcGGCCCUCAAGGg--CCAGc- -3' miRNA: 3'- -GGUCUU-CCGGGAGUUCCagaGGUUcc -5' |
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| 13044 | 3' | -53.9 | NC_003390.1 | + | 36243 | 0.73 | 0.368956 |
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Target: 5'- -gGGAGGGCCCUCAuaagccggauaAGGUC-CUuGGGa -3' miRNA: 3'- ggUCUUCCGGGAGU-----------UCCAGaGGuUCC- -5' |
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| 13044 | 3' | -53.9 | NC_003390.1 | + | 7709 | 0.73 | 0.351632 |
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Target: 5'- cCCGGAgcucucGGGCCCUCugcccAGGUCUCUGguguGGa -3' miRNA: 3'- -GGUCU------UCCGGGAGu----UCCAGAGGUu---CC- -5' |
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| 13044 | 3' | -53.9 | NC_003390.1 | + | 38351 | 0.75 | 0.280961 |
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Target: 5'- cCCA--GGGUCCUCAAGGcCUgCAGGGu -3' miRNA: 3'- -GGUcuUCCGGGAGUUCCaGAgGUUCC- -5' |
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| 13044 | 3' | -53.9 | NC_003390.1 | + | 38044 | 0.76 | 0.228032 |
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Target: 5'- gCCuGAAGGUCCcCAGGGUCcUCAAGGu -3' miRNA: 3'- -GGuCUUCCGGGaGUUCCAGaGGUUCC- -5' |
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| 13044 | 3' | -53.9 | NC_003390.1 | + | 38323 | 0.8 | 0.135027 |
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Target: 5'- gCAGGggcuacaAGGCCCUCAGGGaCUCCcAGGa -3' miRNA: 3'- gGUCU-------UCCGGGAGUUCCaGAGGuUCC- -5' |
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| 13044 | 3' | -53.9 | NC_003390.1 | + | 37865 | 0.9 | 0.026294 |
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Target: 5'- uCCuGAAGGCCCUCAAGGUCcUCAGGGu -3' miRNA: 3'- -GGuCUUCCGGGAGUUCCAGaGGUUCC- -5' |
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| 13044 | 3' | -53.9 | NC_003390.1 | + | 38389 | 1.12 | 0.000745 |
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Target: 5'- cCCAGAAGGCCCUCAAGGUCUCCAAGGu -3' miRNA: 3'- -GGUCUUCCGGGAGUUCCAGAGGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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