Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 744 | 0.66 | 0.335887 |
Target: 5'- uGCCCggUCA-GGUCgUCAuGGCUUGCAGc -3' miRNA: 3'- -CGGG--GGUcCCAGgAGUuCCGGACGUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 10209 | 0.72 | 0.126109 |
Target: 5'- aGCUggCCGGGGUCCUCAagcAGGCCUaugGCAa -3' miRNA: 3'- -CGGg-GGUCCCAGGAGU---UCCGGA---CGUc -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 27268 | 0.66 | 0.368757 |
Target: 5'- uGCCagCCAGGGgcucagCCUCAGccucaGCCUGCu- -3' miRNA: 3'- -CGGg-GGUCCCa-----GGAGUUc----CGGACGuc -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 37849 | 0.77 | 0.054546 |
Target: 5'- gGUCCUCAGGGUCCUgAAGGuCCUGaAGg -3' miRNA: 3'- -CGGGGGUCCCAGGAgUUCC-GGACgUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 37979 | 0.66 | 0.335887 |
Target: 5'- -aCCCUGGGGaCCUUcAGGCCcgGUAGc -3' miRNA: 3'- cgGGGGUCCCaGGAGuUCCGGa-CGUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38037 | 0.83 | 0.019394 |
Target: 5'- gGUCCCCAGGGUCCUCAAGGUaaccCAGg -3' miRNA: 3'- -CGGGGGUCCCAGGAGUUCCGgac-GUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38136 | 0.67 | 0.276723 |
Target: 5'- gGCCCCCAGGGaCCUaAAGGUgacaCAGg -3' miRNA: 3'- -CGGGGGUCCCaGGAgUUCCGgac-GUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38159 | 0.69 | 0.209343 |
Target: 5'- gGCCCCUGGaaGGcCCUguGGGCCcUGUAGa -3' miRNA: 3'- -CGGGGGUC--CCaGGAguUCCGG-ACGUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38229 | 0.69 | 0.209343 |
Target: 5'- gGCCCaCAGGG-CCUUccaGGGGCCgauggUGCAGa -3' miRNA: 3'- -CGGGgGUCCCaGGAG---UUCCGG-----ACGUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38240 | 0.69 | 0.220445 |
Target: 5'- gGCUCCUGGGaGUcCCUgAGGGCCUuGUAGc -3' miRNA: 3'- -CGGGGGUCC-CA-GGAgUUCCGGA-CGUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38271 | 0.7 | 0.174223 |
Target: 5'- --gCCCAGGGUCCacagggaaucCAGGGCgaGCAGg -3' miRNA: 3'- cggGGGUCCCAGGa---------GUUCCGgaCGUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38310 | 0.71 | 0.160845 |
Target: 5'- gGCCCUCAGGGacUCC-CAGGaGCCgauggaGCAGa -3' miRNA: 3'- -CGGGGGUCCC--AGGaGUUC-CGGa-----CGUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38355 | 1.1 | 0.000153 |
Target: 5'- gGCCCCCAGGGUCCUCAAGGCCUGCAGg -3' miRNA: 3'- -CGGGGGUCCCAGGAGUUCCGGACGUC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 38400 | 0.66 | 0.368757 |
Target: 5'- gGCCCCCAaggcccagaaGGcCCUCAAGGUCUcCAa -3' miRNA: 3'- -CGGGGGUc---------CCaGGAGUUCCGGAcGUc -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 39505 | 0.67 | 0.28364 |
Target: 5'- aCCCCCgAGGGUCUUCucccGCCUGagAGg -3' miRNA: 3'- cGGGGG-UCCCAGGAGuuc-CGGACg-UC- -5' |
|||||||
13044 | 5' | -61.5 | NC_003390.1 | + | 43701 | 0.73 | 0.115845 |
Target: 5'- gGCCUgUGGGG-CCUCAggagcgcuucuauAGGCCUGUAGg -3' miRNA: 3'- -CGGGgGUCCCaGGAGU-------------UCCGGACGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home