Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13045 | 3' | -61.3 | NC_003390.1 | + | 9127 | 0.67 | 0.34031 |
Target: 5'- -aGGGuugAGAGGgGCCUUGaAGCCUCUa -3' miRNA: 3'- ggCCC---UCUCCaCGGAACcUCGGGGAg -5' |
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13045 | 3' | -61.3 | NC_003390.1 | + | 33995 | 0.68 | 0.294895 |
Target: 5'- -aGGGuAGAGGccCCUUaGAGCCCCUg -3' miRNA: 3'- ggCCC-UCUCCacGGAAcCUCGGGGAg -5' |
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13045 | 3' | -61.3 | NC_003390.1 | + | 3371 | 0.72 | 0.143441 |
Target: 5'- uUGGGAG-GGUGCUggGGAGCCUUg- -3' miRNA: 3'- gGCCCUCuCCACGGaaCCUCGGGGag -5' |
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13045 | 3' | -61.3 | NC_003390.1 | + | 38244 | 0.73 | 0.125311 |
Target: 5'- cCUGGGAgucccuGAGG-GCCUUGuAGCCCCUg -3' miRNA: 3'- -GGCCCU------CUCCaCGGAACcUCGGGGAg -5' |
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13045 | 3' | -61.3 | NC_003390.1 | + | 20275 | 0.74 | 0.097934 |
Target: 5'- gCUGGGAG-GGUGgCaUGGAGCUCCUg -3' miRNA: 3'- -GGCCCUCuCCACgGaACCUCGGGGAg -5' |
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13045 | 3' | -61.3 | NC_003390.1 | + | 38886 | 1.11 | 0.000158 |
Target: 5'- gCCGGGAGAGGUGCCUUGGAGCCCCUCa -3' miRNA: 3'- -GGCCCUCUCCACGGAACCUCGGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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