miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13048 5' -55.6 NC_003390.1 + 20369 0.66 0.627581
Target:  5'- cUCCAccCAGCGCAucaguGCuCAGGagcuccaugccacccUCCCAGCc -3'
miRNA:   3'- -AGGUacGUCGUGU-----UG-GUCC---------------AGGGUCG- -5'
13048 5' -55.6 NC_003390.1 + 6037 0.66 0.623099
Target:  5'- aUCCGggGCucuuGgACAACaCGGGUUCCAGg -3'
miRNA:   3'- -AGGUa-CGu---CgUGUUG-GUCCAGGGUCg -5'
13048 5' -55.6 NC_003390.1 + 30635 0.67 0.577343
Target:  5'- aCCAUcaggucgGCAGCGCu----GGUCUCAGCa -3'
miRNA:   3'- aGGUA-------CGUCGUGuugguCCAGGGUCG- -5'
13048 5' -55.6 NC_003390.1 + 20844 0.67 0.567383
Target:  5'- -gCGUGCAGCA--GCCAGGaCCgAGg -3'
miRNA:   3'- agGUACGUCGUguUGGUCCaGGgUCg -5'
13048 5' -55.6 NC_003390.1 + 37180 0.68 0.523731
Target:  5'- aUCCGUGCcaUAUAACauguaucacaUAGGUUCCAGCa -3'
miRNA:   3'- -AGGUACGucGUGUUG----------GUCCAGGGUCG- -5'
13048 5' -55.6 NC_003390.1 + 29487 0.68 0.509813
Target:  5'- cCCAaggUGaCAGCACAgaagaccgaacgugGgCAGG-CCCAGCa -3'
miRNA:   3'- aGGU---AC-GUCGUGU--------------UgGUCCaGGGUCG- -5'
13048 5' -55.6 NC_003390.1 + 47527 0.68 0.481424
Target:  5'- gCCAguaGCAGCACGACCcuugAGGauagCCUuAGCg -3'
miRNA:   3'- aGGUa--CGUCGUGUUGG----UCCa---GGG-UCG- -5'
13048 5' -55.6 NC_003390.1 + 3466 0.69 0.47522
Target:  5'- cUCaAUGCAG-GCAGCCAGGaacauccaaggcucCCCAGCa -3'
miRNA:   3'- -AGgUACGUCgUGUUGGUCCa-------------GGGUCG- -5'
13048 5' -55.6 NC_003390.1 + 24224 0.72 0.314994
Target:  5'- aCCA-GCAGCACcaaugguGACCAGG-CCCucagGGCg -3'
miRNA:   3'- aGGUaCGUCGUG-------UUGGUCCaGGG----UCG- -5'
13048 5' -55.6 NC_003390.1 + 44269 1.12 0.000425
Target:  5'- cUCCAUGCAGCACAACCAGGUCCCAGCu -3'
miRNA:   3'- -AGGUACGUCGUGUUGGUCCAGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.