Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13049 | 5' | -52.4 | NC_003390.1 | + | 44184 | 0.67 | 0.769468 |
Target: 5'- aCAUGGAGUAgagcUGGGACcUGGUUgUGCu -3' miRNA: 3'- -GUACUUCGUa---GCUCUGuACCGGgACG- -5' |
|||||||
13049 | 5' | -52.4 | NC_003390.1 | + | 15415 | 0.67 | 0.758877 |
Target: 5'- -uUGcGGCGUUGAGAUcugcgaaaccagAUaGGCCUUGCa -3' miRNA: 3'- guACuUCGUAGCUCUG------------UA-CCGGGACG- -5' |
|||||||
13049 | 5' | -52.4 | NC_003390.1 | + | 1330 | 0.68 | 0.69284 |
Target: 5'- --cGAAGCAUCccuuGAUGgaaacGGCCCUGUg -3' miRNA: 3'- guaCUUCGUAGcu--CUGUa----CCGGGACG- -5' |
|||||||
13049 | 5' | -52.4 | NC_003390.1 | + | 5527 | 0.73 | 0.399433 |
Target: 5'- -cUGAGGCAgaugaUCGAGG-AUGGCUCUGUg -3' miRNA: 3'- guACUUCGU-----AGCUCUgUACCGGGACG- -5' |
|||||||
13049 | 5' | -52.4 | NC_003390.1 | + | 46673 | 1.12 | 0.000843 |
Target: 5'- uCAUGAAGCAUCGAGACAUGGCCCUGCa -3' miRNA: 3'- -GUACUUCGUAGCUCUGUACCGGGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home