miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13051 3' -56.9 NC_003390.1 + 38074 0.66 0.562996
Target:  5'- -uAGGUCCCu--GGGGGCCaGCAu-- -3'
miRNA:   3'- cuUCCGGGGuguUCCCCGGaUGUucg -5'
13051 3' -56.9 NC_003390.1 + 14316 0.66 0.562996
Target:  5'- uGggGGCaCCGCuuGGGGCaCcACAAGa -3'
miRNA:   3'- -CuuCCGgGGUGuuCCCCG-GaUGUUCg -5'
13051 3' -56.9 NC_003390.1 + 38744 0.66 0.562996
Target:  5'- aGAGGGgCUaggaaggggCugAGGGGGCUUugGGGUa -3'
miRNA:   3'- -CUUCCgGG---------GugUUCCCCGGAugUUCG- -5'
13051 3' -56.9 NC_003390.1 + 37315 0.66 0.552076
Target:  5'- uGAGGUCUCcCAAGGGaugacGCUgACAGGCg -3'
miRNA:   3'- cUUCCGGGGuGUUCCC-----CGGaUGUUCG- -5'
13051 3' -56.9 NC_003390.1 + 34401 0.67 0.49859
Target:  5'- aGAAcGCCUUcUAAGGGcCCUACAAGCc -3'
miRNA:   3'- -CUUcCGGGGuGUUCCCcGGAUGUUCG- -5'
13051 3' -56.9 NC_003390.1 + 41708 0.67 0.49859
Target:  5'- --uGGCCUCGCAAcGGGaGCuCUAUAcGCu -3'
miRNA:   3'- cuuCCGGGGUGUU-CCC-CG-GAUGUuCG- -5'
13051 3' -56.9 NC_003390.1 + 34045 0.67 0.4892
Target:  5'- gGggGGCCCgguccgauuccagcaGCAgagGGGGGCCaugggGgGAGCg -3'
miRNA:   3'- -CuuCCGGGg--------------UGU---UCCCCGGa----UgUUCG- -5'
13051 3' -56.9 NC_003390.1 + 38232 0.67 0.488162
Target:  5'- -cAGGgCCCACAgggccuuccAGGGGCCgaugguGCa -3'
miRNA:   3'- cuUCCgGGGUGU---------UCCCCGGauguu-CG- -5'
13051 3' -56.9 NC_003390.1 + 4431 0.68 0.457522
Target:  5'- cGAAGGCgucuucagcuUCCAUgAGGGGGCCagacCAGGCc -3'
miRNA:   3'- -CUUCCG----------GGGUG-UUCCCCGGau--GUUCG- -5'
13051 3' -56.9 NC_003390.1 + 43685 0.68 0.447539
Target:  5'- uAAGGCcuCCCACcggggccuguGGGGCCUcAgGAGCg -3'
miRNA:   3'- cUUCCG--GGGUGuu--------CCCCGGA-UgUUCG- -5'
13051 3' -56.9 NC_003390.1 + 1134 0.68 0.408862
Target:  5'- -uAGGCCCCuuguGGGGCCUucu-GCc -3'
miRNA:   3'- cuUCCGGGGuguuCCCCGGAuguuCG- -5'
13051 3' -56.9 NC_003390.1 + 18998 0.69 0.380362
Target:  5'- cGAGGaucuCCCCAC-AGGGGUUaaguccguaacgaUGCAAGCg -3'
miRNA:   3'- cUUCC----GGGGUGuUCCCCGG-------------AUGUUCG- -5'
13051 3' -56.9 NC_003390.1 + 38328 0.69 0.37234
Target:  5'- uGAGGGCCUUcuggGCcuuGGGGGCCaACA-GCa -3'
miRNA:   3'- -CUUCCGGGG----UGu--UCCCCGGaUGUuCG- -5'
13051 3' -56.9 NC_003390.1 + 43763 0.69 0.37234
Target:  5'- uGAGGCCCCACAggccccgguGGGaGGCCUuAUAu-- -3'
miRNA:   3'- cUUCCGGGGUGU---------UCC-CCGGA-UGUucg -5'
13051 3' -56.9 NC_003390.1 + 30786 0.69 0.362693
Target:  5'- aGAGGCCCUagggguaaaacccGCAcuGGGGGCCgaggaugGCugAAGCg -3'
miRNA:   3'- cUUCCGGGG-------------UGU--UCCCCGGa------UG--UUCG- -5'
13051 3' -56.9 NC_003390.1 + 5622 0.7 0.345602
Target:  5'- -uGGGCCCau--AGGGGCacgggcagucuggCUGCGAGCg -3'
miRNA:   3'- cuUCCGGGguguUCCCCG-------------GAUGUUCG- -5'
13051 3' -56.9 NC_003390.1 + 34066 0.7 0.338102
Target:  5'- aGGGGCUCUA--AGGGGCCUcuacccucucGCAGGUa -3'
miRNA:   3'- cUUCCGGGGUguUCCCCGGA----------UGUUCG- -5'
13051 3' -56.9 NC_003390.1 + 36542 0.71 0.291151
Target:  5'- uGAGGGCgCUugGuGGGGCUUcGCGGGCc -3'
miRNA:   3'- -CUUCCGgGGugUuCCCCGGA-UGUUCG- -5'
13051 3' -56.9 NC_003390.1 + 9106 0.71 0.286747
Target:  5'- cAGGGCaCCugCACGcgcaggaggguugagAGGGGCCUugAAGCc -3'
miRNA:   3'- cUUCCG-GG--GUGU---------------UCCCCGGAugUUCG- -5'
13051 3' -56.9 NC_003390.1 + 8788 0.72 0.2367
Target:  5'- -uGGGaaucCCCCACAAGGGugcuGCCUACcuGGCa -3'
miRNA:   3'- cuUCC----GGGGUGUUCCC----CGGAUGu-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.