miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13061 5' -59.4 NC_003390.1 + 43687 0.66 0.504385
Target:  5'- -aGGC-CUCCcaccgGgGCCUGuGGGGCCUc -3'
miRNA:   3'- ggCCGuGAGGa----UgUGGGCuCCUCGGG- -5'
13061 5' -59.4 NC_003390.1 + 21771 0.66 0.494317
Target:  5'- cCCGGCAacaCCaGCgauggACCCGucuGGGGCCa -3'
miRNA:   3'- -GGCCGUga-GGaUG-----UGGGCu--CCUCGGg -5'
13061 5' -59.4 NC_003390.1 + 34051 0.66 0.474464
Target:  5'- cCCGGUccgAUUCCaGCAgCagaGGGGGGCCa -3'
miRNA:   3'- -GGCCG---UGAGGaUGUgGg--CUCCUCGGg -5'
13061 5' -59.4 NC_003390.1 + 27321 0.66 0.464687
Target:  5'- gCUGGCAagUUCaagACuCCUGAGGAGCUUg -3'
miRNA:   3'- -GGCCGU--GAGga-UGuGGGCUCCUCGGG- -5'
13061 5' -59.4 NC_003390.1 + 27002 0.66 0.464687
Target:  5'- -aGGUACUCCUuaACGagcUCCuuGGAGUCCa -3'
miRNA:   3'- ggCCGUGAGGA--UGU---GGGcuCCUCGGG- -5'
13061 5' -59.4 NC_003390.1 + 38331 0.67 0.445457
Target:  5'- -gGGC-CUUCUGgGCCUuGGGGGCCa -3'
miRNA:   3'- ggCCGuGAGGAUgUGGGcUCCUCGGg -5'
13061 5' -59.4 NC_003390.1 + 7806 0.67 0.43601
Target:  5'- gCCaGCAgCUCCUGCcccucaGCCUGAGucuGCCCc -3'
miRNA:   3'- -GGcCGU-GAGGAUG------UGGGCUCcu-CGGG- -5'
13061 5' -59.4 NC_003390.1 + 1143 0.67 0.40838
Target:  5'- -gGGCGCUUgUAgGCCCcuuguGGGGCCUu -3'
miRNA:   3'- ggCCGUGAGgAUgUGGGcu---CCUCGGG- -5'
13061 5' -59.4 NC_003390.1 + 38588 0.68 0.399416
Target:  5'- -aGGCGCUCCUGgACCacaGGgaccuccuGGAGCUg -3'
miRNA:   3'- ggCCGUGAGGAUgUGGg--CU--------CCUCGGg -5'
13061 5' -59.4 NC_003390.1 + 30742 0.68 0.356533
Target:  5'- aCGGUACUUaaguuCCCGucGAGCCCu -3'
miRNA:   3'- gGCCGUGAGgauguGGGCucCUCGGG- -5'
13061 5' -59.4 NC_003390.1 + 29720 0.7 0.280842
Target:  5'- uCCGGUaACUCCUACACCUacagauGAGauAGCCUc -3'
miRNA:   3'- -GGCCG-UGAGGAUGUGGG------CUCc-UCGGG- -5'
13061 5' -59.4 NC_003390.1 + 20070 0.7 0.280842
Target:  5'- uCCGGUaACUCCUACACCUacagauGAGauAGCCUc -3'
miRNA:   3'- -GGCCG-UGAGGAUGUGGG------CUCc-UCGGG- -5'
13061 5' -59.4 NC_003390.1 + 17498 0.72 0.195005
Target:  5'- cCCGGCaACUCCgucugauuaCCGAGGAGUUCa -3'
miRNA:   3'- -GGCCG-UGAGGaugug----GGCUCCUCGGG- -5'
13061 5' -59.4 NC_003390.1 + 38794 0.73 0.168341
Target:  5'- -gGGuCACUCCcGCGCCUuuGAGGGGCuCCa -3'
miRNA:   3'- ggCC-GUGAGGaUGUGGG--CUCCUCG-GG- -5'
13061 5' -59.4 NC_003390.1 + 10702 1.12 0.000224
Target:  5'- aCCGGCACUCCUACACCCGAGGAGCCCc -3'
miRNA:   3'- -GGCCGUGAGGAUGUGGGCUCCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.