miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13066 3' -50 NC_003390.1 + 33991 0.66 0.922755
Target:  5'- aGGCAGGCC-ACGCUCgcgGGCgGGa-- -3'
miRNA:   3'- aUCGUUUGGuUGUGAGa--CUGgUCagg -5'
13066 3' -50 NC_003390.1 + 28981 0.66 0.922755
Target:  5'- aGGCucAggUCAAU-CUCUGACCGGgCCu -3'
miRNA:   3'- aUCG--UuuGGUUGuGAGACUGGUCaGG- -5'
13066 3' -50 NC_003390.1 + 31650 0.66 0.922755
Target:  5'- gUAGCAGcgcuCCuuguaaGCUCcGGCCAGUUCa -3'
miRNA:   3'- -AUCGUUu---GGuug---UGAGaCUGGUCAGG- -5'
13066 3' -50 NC_003390.1 + 40937 0.66 0.902544
Target:  5'- gUGGUGugaacAACCucauCAuCUCUGACCAGgUCCu -3'
miRNA:   3'- -AUCGU-----UUGGuu--GU-GAGACUGGUC-AGG- -5'
13066 3' -50 NC_003390.1 + 10196 0.66 0.902544
Target:  5'- -uGCGGACCuGCugUUgGAUCAGcCCa -3'
miRNA:   3'- auCGUUUGGuUGugAGaCUGGUCaGG- -5'
13066 3' -50 NC_003390.1 + 47546 0.66 0.895196
Target:  5'- aUGGCAGGCCAAgGC-CUGAUCAc--- -3'
miRNA:   3'- -AUCGUUUGGUUgUGaGACUGGUcagg -5'
13066 3' -50 NC_003390.1 + 47425 0.67 0.88755
Target:  5'- aUGGUuacgGAGCCAggcgucACGCUCUgGGCCAGUa- -3'
miRNA:   3'- -AUCG----UUUGGU------UGUGAGA-CUGGUCAgg -5'
13066 3' -50 NC_003390.1 + 35996 0.67 0.882821
Target:  5'- cAGCGGACCAagcauaccgcucagcACACUCUuGACCGa--- -3'
miRNA:   3'- aUCGUUUGGU---------------UGUGAGA-CUGGUcagg -5'
13066 3' -50 NC_003390.1 + 864 0.67 0.879611
Target:  5'- cAGUAcauCCAACGCUaugugCUGACCAucgugccuGUCCu -3'
miRNA:   3'- aUCGUuu-GGUUGUGA-----GACUGGU--------CAGG- -5'
13066 3' -50 NC_003390.1 + 20615 0.68 0.835783
Target:  5'- uUAGCGAuACCuguuGCugUCUGACCGacaaugCCg -3'
miRNA:   3'- -AUCGUU-UGGu---UGugAGACUGGUca----GG- -5'
13066 3' -50 NC_003390.1 + 29850 0.68 0.826255
Target:  5'- gAGCAugGGCCAGCagccugugACUCUGACaaguGUCUc -3'
miRNA:   3'- aUCGU--UUGGUUG--------UGAGACUGgu--CAGG- -5'
13066 3' -50 NC_003390.1 + 19941 0.68 0.81551
Target:  5'- gAGCAugGGCCAGCagccuggACUCUGACaaguGUCUc -3'
miRNA:   3'- aUCGU--UUGGUUG-------UGAGACUGgu--CAGG- -5'
13066 3' -50 NC_003390.1 + 28330 0.68 0.806523
Target:  5'- -uGCAGGCCAACAaggcugCUGACU--UCCg -3'
miRNA:   3'- auCGUUUGGUUGUga----GACUGGucAGG- -5'
13066 3' -50 NC_003390.1 + 3922 0.7 0.731676
Target:  5'- aAGCAGAuCCAuaGCGgUCUGcugcaGCCAGUUCa -3'
miRNA:   3'- aUCGUUU-GGU--UGUgAGAC-----UGGUCAGG- -5'
13066 3' -50 NC_003390.1 + 10182 0.7 0.731676
Target:  5'- aUGGCAAugcuGCCcAgACUUUGGCUAGUCg -3'
miRNA:   3'- -AUCGUU----UGGuUgUGAGACUGGUCAGg -5'
13066 3' -50 NC_003390.1 + 26067 0.7 0.720427
Target:  5'- aAGCAAAUCGGugaaGCUCUGGCUA-UCCa -3'
miRNA:   3'- aUCGUUUGGUUg---UGAGACUGGUcAGG- -5'
13066 3' -50 NC_003390.1 + 817 0.73 0.558473
Target:  5'- -uGCAAGCCAugACgacCUGACCGGg-- -3'
miRNA:   3'- auCGUUUGGUugUGa--GACUGGUCagg -5'
13066 3' -50 NC_003390.1 + 21103 1.12 0.001531
Target:  5'- aUAGCAAACCAACACUCUGACCAGUCCg -3'
miRNA:   3'- -AUCGUUUGGUUGUGAGACUGGUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.