Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13068 | 5' | -56.8 | NC_003390.1 | + | 40547 | 0.66 | 0.631283 |
Target: 5'- aUCUCauCACCGGC-AACGguguaaagaaAGAcCCGCCCc -3' miRNA: 3'- aAGAG--GUGGCUGcUUGC----------UCU-GGCGGG- -5' |
|||||||
13068 | 5' | -56.8 | NC_003390.1 | + | 27005 | 0.66 | 0.631283 |
Target: 5'- gUCaaggCCGCCGA----UGAGGCCGCCa -3' miRNA: 3'- aAGa---GGUGGCUgcuuGCUCUGGCGGg -5' |
|||||||
13068 | 5' | -56.8 | NC_003390.1 | + | 28654 | 0.66 | 0.6094 |
Target: 5'- gUCUCUACCacccggagcuguGACGcccaucuUGGGGCCGUCCu -3' miRNA: 3'- aAGAGGUGG------------CUGCuu-----GCUCUGGCGGG- -5' |
|||||||
13068 | 5' | -56.8 | NC_003390.1 | + | 11296 | 0.66 | 0.576744 |
Target: 5'- ----gCGCCGA-GGACGuGGCCGCCa -3' miRNA: 3'- aagagGUGGCUgCUUGCuCUGGCGGg -5' |
|||||||
13068 | 5' | -56.8 | NC_003390.1 | + | 18869 | 0.67 | 0.555185 |
Target: 5'- aUCUCgGCgGGCGGAC-AGGCUGUCa -3' miRNA: 3'- aAGAGgUGgCUGCUUGcUCUGGCGGg -5' |
|||||||
13068 | 5' | -56.8 | NC_003390.1 | + | 1971 | 0.69 | 0.432668 |
Target: 5'- cUUCUgaGCCuAUGAACGAGACCgaaucaucGCCCg -3' miRNA: 3'- -AAGAggUGGcUGCUUGCUCUGG--------CGGG- -5' |
|||||||
13068 | 5' | -56.8 | NC_003390.1 | + | 24385 | 1.1 | 0.000569 |
Target: 5'- cUUCUCCACCGACGAACGAGACCGCCCg -3' miRNA: 3'- -AAGAGGUGGCUGCUUGCUCUGGCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home